R Observatory: Metrics for EHRmuse version 0.0.2.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EHRmuse

0.0.2.2Package record

Multi-Cohort Selection Bias Correction using IPW and AIPW Methods

0packages depend

2.5Kdownloads / year

–test coverage

8/13flavors OK

Overview

About

Maintained by Michael KleinsasserCRAN page ↗GitHub ↗Issues ↗

Comprehensive toolkit for addressing selection bias in binary disease models across diverse non-probability samples, each with unique selection mechanisms. It utilizes Inverse Probability Weighting (IPW) and Augmented Inverse Probability Weighting (AIPW) methods to reduce selection bias effectively in multiple non-probability cohorts by integrating data from either individual-level or summary-level external sources. The package also provides a variety of variance estimation techniques. Please refer to Kundu et al. doi:10.48550/arXiv.2412.00228.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("EHRmuse", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Ritoban1/EHRmuse")

Development version from Ritoban1/EHRmuse. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ehrmuse

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EHRmuse

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

5NOTE8OK

Check messages

NOTER code for possible problemsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Found calls to structure() using deprecated special names:
  EHRmuse/R/simplexreg.R (.Names: 1)
'.Names' should be changed to 'names'.

CRAN check page ↗

Slowest check: 3.2 min · r-devel-windows-x86_64

Status changes

NOTE8 OK, 5 NOTENow
NOTE10 OK, 3 NOTE2026-07-16
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.0.2.2

README· In the repository, left out of the releaseVignettesNoNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Cites a JSS article

Help pages: 2
Examples that run: 100%2 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

2.5K

CRAN downloads in the past year

Rank #12,494 · ~7/day · ~208/mo

Releases R versions

Daily download trend is not available in this view yet.

28230 days

88190 days

2.5K1 year

Compare downloads with other packages →

Also on975 r2u

How downloads are counted

Repository

ritoban1/ehrmuse ↗Account: Ritoban1

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2025-07-08

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: not measured

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/ritoban1/ehrmuse on 2026-10-11.

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing EHRmuse adds 28 packages (17 with compiled code, 20 MB of source tarballs). Heaviest: data.table 5.7 MB, survey 2.3 MB, Rcpp 1.8 MB.

Depends (1)

R >= 4.0.0

Imports (11)

Formula plotrix dplyr magrittrMASSnleqslv xgboost surveystatsgraphicsnnet

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (2)

Michael Kleinsasser

Maintainer since 0.0.2.0 (2025)

Ritoban Kundu

Author

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.0.2.2Latest
record
2025-07-08 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
0.0.2.1
record
2025-01-28 · diff ↗
0.0.2.0
record
2025-01-20
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2025-01-20
Total releases: 3 / 1 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.0.0
Download size: 32 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("EHRmuse")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.18637/jss.v071.i11.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EHRmuse version 0.0.2.2 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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