CohortGenerator
Cohort Generation for the OMOP Common Data Model
v1.1.0
·
Mar 3, 2026
·
Apache License
Description
Generate cohorts and subsets using an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database. Cohorts are defined using 'CIRCE' (<https://github.com/ohdsi/circe-be>) or SQL compatible with 'SqlRender' (<https://github.com/OHDSI/SqlRender>).
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 22, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 21, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘CreatingCohortSubsetDefinitions.Rmd’ using rmarkdown --- finished re-building ‘CreatingCohortSubsetDefinitions.Rmd’ --- re-building ‘GeneratingCohorts.Rmd’ using rmarkdown trying URL 'https:/ ...[truncated]... ain/datasets/GiBleed/GiBleed_5.3.zip' failed --- failed re-building ‘UsingTemplateCohorts.Rmd’ SUMMARY: processing the following files failed: ‘GeneratingCohorts.Rmd’ ‘UsingTemplateCohorts.Rmd’ Error: Vignette re-building failed. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Packages required but not available: 'DatabaseConnector', 'ResultModelManager' Package suggested but not available for checking: ‘Eunomia’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 24, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 17, 2026
ERROR
r-release-linux-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘CreatingCohortSubsetDefinitions.Rmd’ using rmarkdown Quitting from CreatingCohortSubsetDefinitions.Rmd:190-212 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...[truncated]... ===================================== downloaded 6.5 MB --- finished re-building ‘UsingTemplateCohorts.Rmd’ SUMMARY: processing the following file failed: ‘CreatingCohortSubsetDefinitions.Rmd’ Error: Vignette re-building failed. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 15, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 13, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘CreatingCohortSubsetDefinitions.Rmd’ using rmarkdown Quitting from CreatingCohortSubsetDefinitions.Rmd:190-212 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...[truncated]... ===================================== downloaded 6.5 MB --- finished re-building ‘UsingTemplateCohorts.Rmd’ SUMMARY: processing the following file failed: ‘CreatingCohortSubsetDefinitions.Rmd’ Error: Vignette re-building failed. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 6, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 3, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Packages required but not available: 'DatabaseConnector', 'ResultModelManager', 'SqlRender' Packages suggested but not available for checking: 'CirceR', 'Eunomia' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Reverse Dependencies (1)
suggests
Dependency Network
Version History
10 tracked
new
1.1.0
Mar 10, 2026
new
0.11.1
Sep 14, 2024