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CSeQTL

Cell Type-Specific Expression Quantitative Trail Loci Mapping

v1.0.0 · Mar 6, 2025 · GPL (>= 3)
CRAN GitHub Mirror

Description

Perform bulk and cell type-specific expression quantitative trail loci mapping with our novel method (Little et al. (2023) <doi:10.1038/s41467-023-38795-w>).

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CRAN Check Status

7 ERROR
4 WARNING
3 OK
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r-devel-linux-x86_64-debian-clang ERROR
r-devel-linux-x86_64-debian-gcc ERROR
r-devel-linux-x86_64-fedora-clang ERROR
r-devel-linux-x86_64-fedora-gcc ERROR
r-devel-macos-arm64 ERROR
r-devel-windows-x86_64 ERROR
r-oldrel-macos-arm64 WARNING
r-oldrel-macos-x86_64 WARNING
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 ERROR
r-release-linux-x86_64 OK
r-release-macos-arm64 WARNING
r-release-macos-x86_64 WARNING
r-release-windows-x86_64 OK
Check details (13 non-OK)
ERROR r-devel-linux-x86_64-debian-clang

whether package can be installed

Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CSeQTL.Rcheck/00install.out’ for details.
ERROR r-devel-linux-x86_64-debian-gcc

whether package can be installed

Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/CSeQTL.Rcheck/00install.out’ for details.
ERROR r-devel-linux-x86_64-fedora-clang

whether package can be installed

Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-clang/CSeQTL.Rcheck/00install.out’ for details.
ERROR r-devel-linux-x86_64-fedora-gcc

whether package can be installed

Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-devel/CSeQTL.Rcheck/00install.out’ for details.
ERROR r-devel-macos-arm64

whether package can be installed

Installation failed.
See ‘/Volumes/Builds/packages/sonoma-arm64/results/4.6/CSeQTL.Rcheck/00install.out’ for details.
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/CSeQTL.Rcheck/00install.out' for details.
NOTE r-oldrel-macos-arm64

installed package size

installed size is 10.2Mb
  sub-directories of 1Mb or more:
    doc    1.2Mb
    libs   8.8Mb
WARNING r-oldrel-macos-arm64

whether package can be installed

Found the following significant warnings:
  all_functions.cpp:1382:11: warning: explicitly assigning value of variable of type 'arma::vec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-arm64/results/4.4/CSeQTL.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 10.4Mb
  sub-directories of 1Mb or more:
    doc    1.2Mb
    libs   8.9Mb
WARNING r-oldrel-macos-x86_64

whether package can be installed

Found the following significant warnings:
  all_functions.cpp:1382:11: warning: explicitly assigning value of variable of type 'arma::vec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.4/CSeQTL.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used SDK: ‘MacOSX11.3.sdk’
ERROR r-patched-linux-x86_64

whether package can be installed

Installation failed.
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/CSeQTL.Rcheck/00install.out’ for details.
WARNING r-release-macos-arm64

whether package can be installed

Found the following significant warnings:
  all_functions.cpp:1382:11: warning: explicitly assigning value of variable of type 'arma::vec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-arm64/results/4.5/CSeQTL.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
WARNING r-release-macos-x86_64

whether package can be installed

Found the following significant warnings:
  all_functions.cpp:1382:11: warning: explicitly assigning value of variable of type 'arma::vec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.5/CSeQTL.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used SDK: ‘MacOSX11.3.sdk’

Check History

ERROR 7 OK · 0 NOTE · 4 WARNING · 3 ERROR · 0 FAILURE Mar 10, 2026
ERROR r-devel-linux-x86_64-debian-gcc

whether package can be installed

Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/CSeQTL.Rcheck/00install.out’ for details.
ERROR r-devel-linux-x86_64-fedora-clang

whether package can be installed

Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-clang/CSeQTL.Rcheck/00install.out’ for details.
ERROR r-devel-linux-x86_64-fedora-gcc

whether package can be installed

Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-devel/CSeQTL.Rcheck/00install.out’ for details.
WARNING r-release-macos-arm64

whether package can be installed

Found the following significant warnings:
  all_functions.cpp:1382:11: warning: explicitly assigning value of variable of type 'arma::vec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-arm64/results/4.5/CSeQTL.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
WARNING r-release-macos-x86_64

whether package can be installed

Found the following significant warnings:
  all_functions.cpp:1382:11: warning: explicitly assigning value of variable of type 'arma::vec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.5/CSeQTL.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used SDK: ‘MacOSX11.3.sdk’
WARNING r-oldrel-macos-arm64

whether package can be installed

Found the following significant warnings:
  all_functions.cpp:1382:11: warning: explicitly assigning value of variable of type 'arma::vec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-arm64/results/4.4/CSeQTL.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
WARNING r-oldrel-macos-x86_64

whether package can be installed

Found the following significant warnings:
  all_functions.cpp:1382:11: warning: explicitly assigning value of variable of type 'arma::vec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.4/CSeQTL.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used SDK: ‘MacOSX11.3.sdk’

Dependency Network

Dependencies Reverse dependencies Rcpp smarter ggplot2 multcomp emdbook MatrixEQTL data.table HelpersMG R.utils GenomicFeatures CSeQTL

Version History

new 1.0.0 Mar 10, 2026