CINmetrics
Calculate Chromosomal Instability Metrics
Description
Implement various chromosomal instability metrics. 'CINmetrics' (Chromosomal INstability metrics) provides functions to calculate various chromosomal instability metrics on masked Copy Number Variation(CNV) data at individual sample level. The chromosomal instability metrics have been implemented as described in the following studies: Baumbusch LO et al. 2013 <doi:10.1371/journal.pone.0054356>, Davidson JM et al. 2014 <doi:10.1371/journal.pone.0079079>, Chin SF et al. 2007 <doi:10.1186/gb-2007-8-10-r215>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Vishal H. Oza <vishoza@uab.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Vishal", "H."),
family = "Oza",
role = c("aut", "cre"),
email = "vishoza@uab.edu"),
person(given = "Roshan",
family = "Darji",
role = "aut"),
person(given = c("Brittany", "N."),
family = "Lasseigne",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Vishal H. Oza <vishoza@uab.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Vishal", "H."),
family = "Oza",
role = c("aut", "cre"),
email = "vishoza@uab.edu"),
person(given = "Roshan",
family = "Darji",
role = "aut"),
person(given = c("Brittany", "N."),
family = "Lasseigne",
role = "aut"))
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Vishal H. Oza <vishoza@uab.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Vishal", "H."),
family = "Oza",
role = c("aut", "cre"),
...[truncated]...
person(given = "Roshan",
family = "Darji",
role = "aut"),
person(given = c("Brittany", "N."),
family = "Lasseigne",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Vishal H. Oza <vishoza@uab.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Vishal", "H."),
family = "Oza",
role = c("aut", "cre"),
...[truncated]...
person(given = "Roshan",
family = "Darji",
role = "aut"),
person(given = c("Brittany", "N."),
family = "Lasseigne",
role = "aut"))
as necessary.