BioPET

0.2.2

Biomarker Prognostic Enrichment Tool

0packages depend

2.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Jeremy RothFirst published 2016-07-024 releasesCRAN page ↗

Prognostic Enrichment is a clinical trial strategy of evaluating an intervention in a patient population with a higher rate of the unwanted event than the broader patient population (R. Temple (2010) <DOI:10.1038/clpt.2010.233>). A higher event rate translates to a lower sample size for the clinical trial, which can have both practical and ethical advantages. This package is a tool to help evaluate biomarkers for prognostic enrichment of clinical trials.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BioPET")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# one-time r2u setup for Ubuntu (noble)

curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash

# then install

sudo apt install r-cran-biopet

Fast Ubuntu binaries via r2u (no compilation). Run the setup once per machine.

bspm (used by r2u) also needs make: sudo apt install make

sudo dnf copr enable iucar/cran

sudo dnf install R-CRAN-BioPET

RPMs from the iucar/cran COPR, rebuilt from CRAN.

sudo zypper install R-BioPET

RPMs auto-built from CRAN on openSUSE OBS.

Health

CRAN checks

13OK

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

None

Vignettes

README

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

2.8K

CRAN downloads in the past year

Rank #16,000 · ~8/day · ~234/mo

BioPET Releases R versions

Daily download trend is not available in this view yet.

28430 days

70690 days

2.8K1 year

Compare downloads with other packages →

Also on376 r2u60 autocran

Source & community

Repository stars, issues, and contributor activity are not tracked yet.

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (4)

ggplot2 gridExtra pROC VGAM

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 725 (77%)Rd 213 (23%)

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

7 3 exported

Complexity

10.7 avg / 26 max

Call network

7 nodes / 5 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (3)

Maintainer (1)

Jeremy Roth

Maintainer, Author

Authors (3)

Jeremy Roth

Maintainer, Author

Kathleen F. Kerr

Author

Kehao Zhu

Author

Release timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.2.2Latest
2018-07-17 · current release · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
0.2.1
2017-02-17 · diff ↗
0.2.0
2016-07-04 · diff ↗
0.1.0
2016-07-02
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-07-02
Total releases: 4 / 10 yrs
License: GPL (>= 2) OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet