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BeeBDC

Occurrence Data Cleaning

v1.3.3 · Feb 5, 2026 · GPL (>= 3)

Description

Flags and checks occurrence data that are in Darwin Core format. The package includes generic functions and data as well as some that are specific to bees. This package is meant to build upon and be complimentary to other excellent occurrence cleaning packages, including 'bdc' and 'CoordinateCleaner'. This package uses datasets from several sources and particularly from the Discover Life Website, created by Ascher and Pickering (2020). For further information, please see the original publication and package website. Publication - Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.

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CRAN Check Status

14 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 1, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 27, 2026
ERROR r-devel-linux-x86_64-fedora-clang

tests

Running ‘testthat.R’ [118s/357s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additiona
...[truncated]...
rization)`: Errors finished.
  Backtrace:
      ▆
   1. └─BeeBDC::beesTaxonomy(mode = mode, headers = NULL, token = Authorization) at test-beesTaxonomy.R:57:1
  
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 244 ]
  Error:
  ! Test failures.
  Execution halted
ERROR r-devel-linux-x86_64-fedora-gcc

tests

Running ‘testthat.R’ [118s/212s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additiona
...[truncated]...
rization)`: Errors finished.
  Backtrace:
      ▆
   1. └─BeeBDC::beesTaxonomy(mode = mode, headers = NULL, token = Authorization) at test-beesTaxonomy.R:57:1
  
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 244 ]
  Error:
  ! Test failures.
  Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies circlize CoordinateCleaner cowplot dplyr forcats ggplot2 ggspatial here igraph lubridate mgsub openxlsx paletteer readr rnaturalearth +3 more dependencies BeeBDC

Version History

new 1.3.3 Mar 10, 2026
updated 1.3.3 ← 1.3.2 diff Feb 5, 2026
updated 1.3.2 ← 1.3.1 diff Jan 15, 2026
updated 1.3.1 ← 1.3.0 diff Sep 21, 2025
updated 1.3.0 ← 1.2.1 diff Aug 22, 2025
updated 1.2.1 ← 1.2.0 diff Nov 3, 2024
updated 1.2.0 ← 1.1.1 diff Jun 20, 2024
updated 1.1.1 ← 1.1.0 diff Apr 3, 2024
updated 1.1.0 ← 1.0.4 diff Mar 20, 2024
updated 1.0.4 ← 1.0.3 diff Feb 13, 2024
updated 1.0.3 ← 1.0.2 diff Dec 19, 2023
updated 1.0.2 ← 1.0.1 diff Nov 29, 2023
updated 1.0.1 ← 1.0.0 diff Oct 8, 2023
new 1.0.0 Sep 14, 2023