BayesianDEB
Bayesian Dynamic Energy Budget Modelling
Description
Provides a Bayesian framework for Dynamic Energy Budget (DEB) modelling via 'Stan'. Implements the standard DEB model of Kooijman (2010, <doi:10.1017/CBO9780511805400>) as a state-space model with Hamiltonian Monte Carlo inference (Carpenter et al., 2017, <doi:10.18637/jss.v076.i01>). Includes individual-level growth models, growth-reproduction models, hierarchical multi-individual models with partial pooling, and toxicokinetic-toxicodynamic (TKTD) models for ecotoxicology following the DEBtox framework (Jager et al., 2006, <doi:10.1007/s10646-006-0060-x>). Supports prior specification from biological knowledge, convergence diagnostics (Vehtari et al., 2021, <doi:10.1214/20-BA1221>), posterior predictive checks, derived quantity estimation, and visualisation via 'ggplot2'.
Downloads
436
Last 30 days
9134th
1.2K
Last 90 days
1.2K
Last year
Trend: -14.2% (30d vs prior 30d)
11
Last 30 days
29
Last 90 days
29
Last year
Trend: -38.9% (30d vs prior 30d)
24
Last 7 days
92
Last 30 days
14
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 11 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 6 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
package dependencies
Package suggested but not available for checking: ‘cmdstanr’
package dependencies
Package suggested but not available for checking: 'cmdstanr'