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BIGL

Biochemically Intuitive Generalized Loewe Model

v1.9.3 · Aug 1, 2024 · GPL-3

Description

Response surface methods for drug synergy analysis. Available methods include generalized and classical Loewe formulations as well as Highest Single Agent methodology. Response surfaces can be plotted in an interactive 3-D plot and formal statistical tests for presence of synergistic effects are available. Implemented methods and tests are described in the article "BIGL: Biochemically Intuitive Generalized Loewe null model for prediction of the expected combined effect compatible with partial agonism and antagonism" by Koen Van der Borght, Annelies Tourny, Rytis Bagdziunas, Olivier Thas, Maxim Nazarov, Heather Turner, Bie Verbist & Hugo Ceulemans (2017) <doi:10.1038/s41598-017-18068-5>.

Downloads

CRAN

431

Last 30 days

9917th

1K

Last 90 days

5.8K

Last year

Trend: +33% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

27

Last 90 days

110

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

3

Last 7 days

47

Last 30 days

0

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR r-devel-linux-x86_64-debian-gcc

package dependencies

Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

8,539

Files

128

Compiled share

0%

Has compiled src

No

Language breakdown

R 4,167 (48.8%)Tests 747 (8.7%)Docs 2,679 (31.4%)Vignettes 946 (11.1%)

API

Exported functions

16

Internal functions

59

Recent export changes

v1.8.0+1 synergy_plot_bycomp

Testing & CI

Has tests

Yes

Test-to-code ratio

0.18

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

75%

\dontrun example ratio

38.5%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.5

System requirements

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

27

First release

2017-06-30

Latest release

2024-08-01

Avg cadence

93 days

Cold removal rate

100%

Dep drift

7

LOC over versions

v1.0.1: 5,299 LOCv1.1.0: 5,458 LOCv1.1.1: 5,462 LOCv1.2.0: 5,725 LOCv1.2.2: 5,765 LOCv1.2.3: 5,765 LOCv1.3.0: 5,930 LOCv1.4.1: 6,150 LOCv1.4.2: 6,175 LOCv1.4.3: 6,183 LOCv1.5.1: 6,347 LOCv1.5.2: 6,348 LOCv1.5.3: 6,348 LOCv1.6.0: 7,334 LOCv1.6.1: 7,336 LOCv1.6.2: 7,343 LOCv1.6.3: 7,341 LOCv1.6.4: 7,351 LOCv1.6.5: 7,353 LOCv1.6.6: 7,363 LOCv1.6.7: 7,358 LOCv1.7.0: 7,748 LOCv1.8.0: 8,019 LOCv1.9.0: 8,499 LOCv1.9.1: 8,503 LOCv1.9.2: 8,507 LOCv1.9.3: 8,539 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies ggplot2 MASS minpack.lm numDeriv progress plotly robustbase scales nleqslv data.table lifecycle htmlwidgets magrittr BIGL

Version History

28 tracked
new 1.9.3 Mar 10, 2026
updated 1.9.3 ← 1.9.2 diff Jul 31, 2024
updated 1.9.2 ← 1.9.1 diff Jun 25, 2024
updated 1.9.1 ← 1.9.0 diff May 21, 2024
updated 1.9.0 ← 1.8.0 diff Dec 20, 2023
updated 1.8.0 ← 1.7.0 diff Jun 12, 2023
updated 1.7.0 ← 1.6.7 diff Mar 7, 2023
updated 1.6.7 ← 1.6.6 diff Jan 25, 2023
updated 1.6.6 ← 1.6.5 diff May 4, 2022
updated 1.6.5 ← 1.6.4 diff Oct 26, 2021
updated 1.6.4 ← 1.6.3 diff Sep 1, 2021
updated 1.6.3 ← 1.6.2 diff Jun 29, 2021
updated 1.6.2 ← 1.6.1 diff Mar 9, 2021
updated 1.6.1 ← 1.6.0 diff Jan 23, 2021
updated 1.6.0 ← 1.5.3 diff Dec 15, 2020