BIGDAWG
Case-Cotrol Analysis of Multi-Allelic Loci
Description
Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 6 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 1, 2026
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Steve Mack <Steven.Mack@ucsf.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Derek",
family = "Pappas",
role = "aut",
em
...[truncated]...
"),
email = "Steven.Mack@ucsf.edu"),
person(given = "Jill",
family = "Hollenbach",
role = "aut",
email = "Jill.Hollenbach@ucsf.edu"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Steve Mack <Steven.Mack@ucsf.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Derek",
family = "Pappas",
role = "aut",
em
...[truncated]...
"),
email = "Steven.Mack@ucsf.edu"),
person(given = "Jill",
family = "Hollenbach",
role = "aut",
email = "Jill.Hollenbach@ucsf.edu"))
as necessary.
dependencies in R code
Namespace in Imports field not imported from: ‘httr’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘httr’ All declared Imports should be used.