Arothron

Geometric Morphometric Methods and Virtual Anthropology Tools

v2.0.5 · Feb 1, 2023 · GPL-2

Description

Tools for geometric morphometric analysis. The package includes tools of virtual anthropology to align two not articulated parts belonging to the same specimen, to build virtual cavities as endocast (Profico et al, 2021 <doi:10.1002/ajpa.24340>).

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CRAN Check Status

2 NOTE

11 OK

Show all 13 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	119.3s
r-devel-linux-x86_64-debian-gcc	NOTE	90.8s
r-devel-linux-x86_64-fedora-clang	OK	187s
r-devel-linux-x86_64-fedora-gcc	OK	183.2s
r-devel-windows-x86_64	OK	144s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	97s
r-oldrel-windows-x86_64	OK	169s
r-patched-linux-x86_64	OK	108.5s
r-release-linux-x86_64	OK	107.3s
r-release-macos-arm64	OK	29s
r-release-macos-x86_64	OK	106s
r-release-windows-x86_64	OK	135s

Check details (2 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
                      email = "antonio.profico@gmail.com"),
               person(given = "Costantino",
                      family = "Buzi",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Castiglione",
                      role = "aut"),
               person(given = "Marina",
                      family = "Melchionna",
                      role = "aut"),
               person(given = "Paolo",
                      family = "Piras",
                      role = "aut"),
               person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
                      email = "antonio.profico@gmail.com"),
               person(given = "Costantino",
                      family = "Buzi",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Castiglione",
                      role = "aut"),
               person(given = "Marina",
                      family = "Melchionna",
                      role = "aut"),
               person(given = "Paolo",
                      family = "Piras",
                      role = "aut"),
               person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

Check History

NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

ERROR 11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

ERROR r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

WARNING 11 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE May 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

WARNING r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.1Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.1Mb

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.1Mb

ERROR 9 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

ERROR r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.1Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.1Mb

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.1Mb

NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
 
...[truncated]...
            person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.

NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.1Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.1Mb

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.1Mb

Code & tests

Open call graph →

Line coverage

–

Expression

–

Tests / Examples

–

Functions

34 34 exported

Complexity

4.3 avg / 11 max

Call network

34 nodes / 24 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

4,015

Files

132

Compiled share

Has compiled src

Language breakdown

R 2,235 (55.7%)Docs 1,780 (44.3%)

API

Exported functions

Internal functions

Recent export changes

v2.0.5+2 image2palettes, permutangle

v2.0.1+4 CScorreffect, MLECScorrection, PCscoresCorr +1 more

Testing & CI

Has tests

Test-to-code ratio

0.00

testthat edition

–

CI present

CI type

[]

PR gated

Docs

Return-value doc rate

79.4%

\dontrun example ratio

50%

Roxygen coverage

100%

Has pkgdown

NEWS present

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

–

Unsafe pattern score

Dep constraint coverage

100%

Secret pattern count

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.5.0

System requirements

–

C++ standard

–

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

First release

2018-04-03

Latest release

2023-02-01

Avg cadence

173 days

Cold removal rate

–

Dep drift

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Reverse Dependencies (2)

imports

Toothnroll morphomap

Dependency Network

Version History

10 tracked

new 2.0.5 Mar 10, 2026

updated 2.0.5 ← 2.0.3 diff Jan 31, 2023

updated 2.0.3 ← 2.0.2 diff Sep 30, 2021

updated 2.0.2 ← 2.0.1 diff Jun 7, 2021

updated 2.0.1 ← 1.1.1 diff Oct 20, 2020

updated 1.1.1 ← 1.1.0 diff Dec 4, 2019

updated 1.1.0 ← 1.0.2 diff Oct 26, 2019

updated 1.0.2 ← 1.0.1 diff Jul 15, 2018

updated 1.0.1 ← 1.0.0 diff Jun 13, 2018

new 1.0.0 Apr 2, 2018

People

Antonio Profico

Available on

CRAN r2u Bioconductor autoCRAN COPR

Dependencies

Depends

R (>= 3.5.0)

Imports

abind (>= 1.4)alphashape3d (>= 1.3)compositions (>= 1.40-1)doParallel (>= 1.0.11)foreach (>= 1.4.4)geometry (>= 0.3-6)graphics(>= 3.4.0)grDevices(>= 3.4.0)methods (>= 3.5)Morpho (>= 2.5.0)parallel (>= 1.0)rgl (>= 1.0.1)Rvcg (>= 0.17)stats (>= 3.4.0)stats4 (>= 4.0)stringr (>= 1.3.0)utils (>= 3.4.0)vegan (>= 2.4)

Compilation

No compilation needed

First Published

Apr 2, 2018

First appeared in R 3.4.4 · current R 4.6.1

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