AnnoProbe
Annotate the Gene Symbols for Probes in Expression Array
v0.1.7
·
Nov 14, 2022
·
Apache License (>= 2)
Description
We curated 147 of expression array, from 3 species(human,mouse,rat), 3 companies('Affymetrix','Illumina','Agilent'), by aligning the 'Fasta' sequences of all probes of each platform to their corresponding reference genome, and then annotate them to genes.
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Package required but not available: ‘ggpubr’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 9, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 2, 2026
ERROR
r-patched-linux-x86_64
examples
Running examples in ‘AnnoProbe-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: idmap
> ### Title: Get Probe Annotation
> ### Aliases: idmap
>
> ### ** Examples
>
> ids=idmap('GP
...[truncated]...
7.111/GEOmirror/GPL/GPL570_bioc.rda': Timeout of 60 seconds was reached
Error in download.file(paste0(up, down), dt, mode = "wb") :
cannot open URL 'http://49.235.27.111/GEOmirror/GPL/GPL570_bioc.rda'
Calls: idmap -> download.file
Execution halted