AnnoProbe
Annotate the Gene Symbols for Probes in Expression Array
v0.1.7
·
Nov 14, 2022
·
Apache License (>= 2)
Description
We curated 147 of expression array, from 3 species(human,mouse,rat), 3 companies('Affymetrix','Illumina','Agilent'), by aligning the 'Fasta' sequences of all probes of each platform to their corresponding reference genome, and then annotate them to genes.
Downloads
930
Last 30 days
3953rd
2.7K
Last 90 days
12.6K
Last year
Trend: +24% (30d vs prior 30d)
CRAN Check Status
1
ERROR
13
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | ERROR |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
ERROR
r-patched-linux-x86_64
examples
Running examples in ‘AnnoProbe-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: idmap
> ### Title: Get Probe Annotation
> ### Aliases: idmap
>
> ### ** Examples
>
> ids=idmap('GPL570',destdir=tempdir())
trying URL 'http://49.235.27.111/GEOmirror/GPL/GPL570_bioc.rda'
Warning in download.file(paste0(up, down), dt, mode = "wb") :
URL 'http://49.235.27.111/GEOmirror/GPL/GPL570_bioc.rda': Timeout of 60 seconds was reached
Error in download.file(paste0(up, down), dt, mode = "wb") :
cannot open URL 'http://49.235.27.111/GEOmirror/GPL/GPL570_bioc.rda'
Calls: idmap -> download.file
Execution halted
Additional Issues
OpenBLAS
Details →
Check History
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 2, 2026
ERROR
r-patched-linux-x86_64
examples
Running examples in ‘AnnoProbe-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: idmap
> ### Title: Get Probe Annotation
> ### Aliases: idmap
>
> ### ** Examples
>
> ids=idmap('GP
...[truncated]...
7.111/GEOmirror/GPL/GPL570_bioc.rda': Timeout of 60 seconds was reached
Error in download.file(paste0(up, down), dt, mode = "wb") :
cannot open URL 'http://49.235.27.111/GEOmirror/GPL/GPL570_bioc.rda'
Calls: idmap -> download.file
Execution halted