trio 1.2.8 to 2.1.1
CRANRecord of 1.2.8Record of 2.1.1Both records side by side
- 1.2.8 and 2.1.1
- between them
- other releases
- daily mean, week by week
- before the CRAN mirror’s logs begin
- Time between
- 684 days12 releases between
- Advisories, method
Method
Security advisories
Advisories come from the R Consortium advisory database, a community record of security problems in R packages, as OSV publishes it.
- The copy
- The record is read once a day. The data is published under the Apache License 2.0 and is credited on the advisories list.
- Box under the name
- Under the package's name, a box names any advisory that affects the current release, with its fix or that there is none.
- Ranges
- Advisories state ranges, such as from 0.9.12 up to but not including 1.8.8. Each range is checked against every version CRAN has published, using the version rules R itself uses, so a release that came out after the advisory was written is still caught by its range.
- Not the package
- The rating is for the library flaw itself, not for how exposed the R package is, and it is never added up into a figure for the package.
- None knownfor either release
- Exports, method
- 1 removed15 added
- Dependencies
- 6 changes3 added, 1 bound, 2 moved3 added, 1 bound
- Licence
- SameLGPL-2
- Maintainer
- SameHolger Schwender
Downloads while newest
Method, downloads Method Download figures count requests logged by each distribution channel. They are not counts of installs or of users, because each channel publishes its own totals and this site reads them.Downloads
- – before the CRAN mirror’s logs begin on 1 Oct 2012
| Release | Days newest | CRAN downloads | Daily mean |
|---|---|---|---|
| 2.1.1 7 to 30 Aug 2013, then archived | 24 | 255 | 11 |
| 1.2.8 23 Sep to 13 Oct 2011 | 21 | – | – |
Counted on the CRAN mirror from each release's day to the day before the next release. Other channels repackage on their own schedules, so they are not split by release.
Dependencies
Method, dependencies Method Dependent packages are other packages that list this one under Reverse dependencies
Depends, Imports or LinkingTo in their DESCRIPTION file. Those fields list the packages a package needs to install, so dependents break if this one is archived or broken.Suggests install and run without it, and use it for tests, examples or an optional feature. They are counted as Suggested by, never among the dependents, and a package that also lists it under one of the three fields is a dependent and is not counted again.
- added
- bound or field changed
| Package | Field | 1.2.8 | 2.1.1 | |
|---|---|---|---|---|
| added | R | Depends | – | >= 3.0.1 |
| changed | haplo.stats | Depends to Suggests | any version | any version |
| added | logicFS | Suggests | – | >= 1.28.1 |
| changed | LogicReg | Suggests | any version | >= 1.5.3 |
| added | mcbiopi | Suggests | – | any version |
| changed | survival | Depends to Suggests | any version | any version |
Side by side
| Measure | 1.2.8 | 2.1.1 | Change |
|---|---|---|---|
| R | None stated | >= 3.0.1 | added |
| Depends | 2 packages | 0 packages | 2 bounds |
| Suggests | 3 packages | 7 packages | +2, 3 bounds |
Exports
added Added (15)
allelicTDTcolGxGcolGxGPermscolPOlrtcolTATgetGxEstatsgetLDlargegetMatPseudolrControlprobTDTtdtGxGtrio.powertrio.preparetrioFStrioLR
removed Removed (1)
trio
Licence and people
Method, licences Method Licence figures come from the Licences
License field of each package's DESCRIPTION file, read the way R itself reads it. No licence file is opened.tools::analyze_license() and R's own licence database, as CRAN's checks read it.| is read, so one string can offer two families.
| Part | 1.2.8 | 2.1.1 | |
|---|---|---|---|
| added | Person named | – | Christoph Neumann |
| added | Person named | – | Ingo Ruczinski |
| added | Person named | – | Margaret Taub |
Side by side
| Measure | 1.2.8 | 2.1.1 | Change |
|---|---|---|---|
| Licence | LGPL-2 | LGPL-2 | |
| Maintainer | Holger Schwender | Holger Schwender | |
| People named | Holger Schwender, Qing Li | Holger Schwender, Qing Li, Christoph Neumann, Margaret Taub, Ingo Ruczinski | changed |
Code
Method, code Method Code metrics come from reading the released source of each package version. The package is never installed, loaded or run.Code metrics
README, vignettes, a NEWS file and the shares read from its help pages. Files kept only in the repository, such as a pkgdown configuration or CI files, are read by the repository scan instead.
| Measure | 1.2.8 | 2.1.1 | Change |
|---|---|---|---|
| Lines of R code | 14,732 | 16,961 | +2,229 up |
| Files | 55 | 84 | +29 up |
| Public exports | 35 | 49 | +14 up |
| Internal functions | 97 | 165 | +68 up |
| Mean complexity | 6.8 | 6.4 | −0.4 down |
| Download size | 498 KB | 722 KB | +224 KB up |
| Source, unpacked | 1.1 MB | 1.5 MB | +424 KB up |
2 other figures of the code are the same in both.
Side by side
| Measure | 1.2.8 | 2.1.1 | Change |
|---|---|---|---|
| Lines of R code | 14,732 | 16,961 | +2,229 |
| Lines of compiled code | 0 | 0 | |
| Files | 55 | 84 | +29 |
| Public exports | 35 | 49 | +14 |
| Internal functions | 97 | 165 | +68 |
| Mean complexity | 6.8 | 6.4 | −0.4 |
| Highest complexity | 43 | 43 | |
| Download size | 498 KB | 722 KB | +224 KB |
| Source, unpacked | 1.1 MB | 1.5 MB | +424 KB |
| Analysed with | rpkg-analyzer 0.5.2 | rpkg-analyzer 0.5.2 |
Documentation
| Measure | 1.2.8 | 2.1.1 | Change |
|---|---|---|---|
| Arguments documented | 98.5% | 99.2% | +0.7 points up |
| Return value documented | 100.0% | 96.2% | −3.8 points down |
| Lines of documentation | 1,679 | 3,300 | +1,621 up |
| Lines of guides | 0 | 9,295 | +9,295 up |
1 other figure of the documentation is the same in both.
Side by side
| Measure | 1.2.8 | 2.1.1 | Change |
|---|---|---|---|
| Exports documented | 100.0% | 100.0% | |
| Arguments documented | 98.5% | 99.2% | +0.7 points |
| Return value documented | 100.0% | 96.2% | −3.8 points |
| Lines of documentation | 1,679 | 3,300 | +1,621 |
| Lines of guides | 0 | 9,295 | +9,295 |
Files changed
- Files changed
- 90over 13 releases
- Lines added
- 12,508
- Lines deleted
- 6,431
Most changed files (12 of 90)
| File | Lines added | Lines deleted |
|---|---|---|
src/generalLR.f | 3,477 | 3,477 |
src/trioExternal.f | 684 | 684 |
vignettes/trio.Rnw | 1,260 | 32 |
src/trioLR.f | 350 | 769 |
inst/doc/trio.Rnw | 523 | 232 |
R/trioLR.R | 481 | 248 |
R/trio.power.R | 629 | 7 |
R/colGxE.R | 420 | 87 |
R/tdt.R | 164 | 340 |
inst/doc/trio.R | 459 | 0 |
MD5 | 184 | 155 |
R/trioFS.R | 289 | 16 |
Each release is counted against the release before it, so a line changed twice counts twice.
Unchanged and not compared
Licence and maintainer are the same in both releases. No advisory is known for either release. Neither release has tests.
CRAN archived trio on 31 Aug 2013, so 2.1.1 was its last release and the newest until the day before.
Checks, the install tree, dependents and the repository describe the package as it is now, so they are on the package page.