rEDM
‹2.0.2
- 2.0.230 Aug 2026, current
- 2.0.131 Jul 2026
- 1.15.46 Apr 2024
- 1.15.310 Jan 2024
- 1.15.110 Nov 2023
- 1.15.023 Oct 2023
- 1.14.37 Jul 2023
- 1.14.09 Jan 2023
- 1.13.16 Aug 2022
- 1.13.022 Jun 2022
- 1.12.21 Jun 2022
- 1.12.015 May 2022
- 1.11.015 Apr 2022
- 1.10.331 Mar 2022
- 1.10.213 Feb 2022
- 1.10.122 Jan 2022
- 1.10.019 Dec 2021
- 1.9.316 Oct 2021
- 1.9.216 Sep 2021
- 1.9.18 Aug 2021
- 1.9.022 Jun 2021
- 1.8.23 May 2021
- 1.8.122 Mar 2021
- 1.8.027 Feb 2021
- 1.7.525 Jan 2021
- 1.7.411 Jan 2021
- 1.7.34 Jan 2021
- 1.7.14 Dec 2020
- 1.7.014 Nov 2020
- 1.6.120 Oct 2020
- 1.5.06 Jul 2020
- 1.3.8.523 Jun 2020
- 1.3.8.216 Jun 2020
- 1.3.88 Jun 2020
- 1.2.36 Mar 2020
- 1.2.22 Mar 2020
- 0.7.325 Nov 2019
- 0.7.210 Dec 2018
- 0.7.120 Jun 2018
- 0.6.95 Dec 2017
- 0.6.57 Nov 2017
- 0.5.416 Nov 2016
- 0.5.322 Oct 2016
- 0.4.710 Mar 2016
- 0.4.57 Mar 2016
- 0.4.45 Mar 2016
Empirical Dynamic Modeling ('EDM')
- CRAN checks, method
Method
Checks and health
CRAN runs every current package through
R CMD checkon a set of machines and publishes a result for each one. The health shown on a package page comes from these results alone.- Problems
- Notes alone never count against a package, but a warning, an error or a failure on any platform is a problem. Open CRAN deadlines are a fact of their own, shown as a clock after the mark, so the mark always says what the checks found.
- Checks only
- Health reflects CRAN's check results and nothing else. Even a package with no tests, no coverage or no recent release can have every platform OK.
- Once a day
- Results are collected once a day from files CRAN publishes. Each platform is one machine set-up, named by its R version, operating system, architecture and compiler, such as r-devel-linux-x86_64-fedora-clang.
- Platforms counted
- The 13 in 3 of 13 is the number of platform rows CRAN published for that package on the day of collection. The set of machines changes over time, so the number is not fixed, and a package missing from a platform counts as neither passing nor failing there.
- 1 of 13platforms with problems
- CRAN 30-day downloads, method
- 844−7.2% down on the 30 days before, the worse direction
- Dependent packages, method
Method
Reverse dependencies
Dependent packages are other packages that list this one under
Depends,ImportsorLinkingToin theirDESCRIPTIONfile. Those fields list the packages a package needs to install, so dependents break if this one is archived or broken.- As declared
- The counts follow the declarations as written, not whether a package uses the other one when it runs.
- Suggests apart
- Packages that list this one only under
Suggestsinstall and run without it, and use it for tests, examples or an optional feature. They are counted as Suggested by, never among the dependents, and a package that also lists it under one of the three fields is a dependent and is not counted again. - Zero
- Zero dependents means no current CRAN package declares a need for this one, though some may suggest it. On 28 Oct 2026, 19,572 of the 25,583 current CRAN packages had no dependent package.
- 1none suggest it
- Test coverage, method
Method
Test coverage
Test coverage is measured by downloading each CRAN package's current source file, installing its dependencies, building it and running its tests under covr.
- Almost half of CRAN has no tests to run
- Only CRAN packages are measured. Many have no percentage, most often because the package has no tests, and that blank is a recorded outcome, not missing data.
- NOT_CRAN
- Tests run with NOT_CRAN=true, so tests that skip themselves on CRAN run here, and the figure can differ from what CRAN's own checks see.
- Current version only
- Only the current version is measured, and a new version on CRAN is measured again. Older rows are kept but never filled in later. This is one package's run.
- Never 0%
- On a package page three states stay apart: measured, no tests, and not measured. Neither of the last two is ever shown as 0%.
- No testsnothing to run
- Advisories, method
Method
Security advisories
Advisories come from the R Consortium advisory database, a community record of security problems in R packages, as OSV publishes it.
- The copy
- The record is read once a day. The data is published under the Apache License 2.0 and is credited on the advisories list.
- Box under the name
- Under the package's name, a box names any advisory that affects the current release, with its fix or that there is none.
- Ranges
- Advisories state ranges, such as from 0.9.12 up to but not including 1.8.8. Each range is checked against every version CRAN has published, using the version rules R itself uses, so a release that came out after the advisory was written is still caught by its range.
- Not the package
- The rating is for the library flaw itself, not for how exposed the R package is, and it is never added up into a figure for the package.
- None known
About
Method, About Method Licence figures come from the Licences
License field of each package's DESCRIPTION file, read the way R itself reads it. No licence file is opened.tools::analyze_license() and R's own licence database, as CRAN's checks read it.| is read, so one string can offer two families.
An implementation of 'EDM' algorithms based on research software developed at the Sugihara Lab ('UCSD/SIO'). Primary methods include 'Simplex' projection from Sugihara & May (1990) <doi:10.1038/344734a0>, Sequential locally-weighted global linear maps 'S-map': Sugihara (1994) ...
Full description
An implementation of 'EDM' algorithms based on research software developed at the Sugihara Lab ('UCSD/SIO'). Primary methods include 'Simplex' projection from Sugihara & May (1990) <doi:10.1038/344734a0>, Sequential locally-weighted global linear maps 'S-map': Sugihara (1994) <doi:10.1098/rsta.1994.0106>, Convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'Multiview embedding' from Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
- Maintainer
- Joseph Park
- Licence
- BSD_2_clause + file LICENSE
- Latest release
- 30 Aug 2026
- First release
- 5 Mar 2016
More details
- Releases
- 46
- Needs compilation
- No
- Config/testthat/edition
- 3
- Date
- 2026-08-21
- LazyData
- true
- RoxygenNote
- 8.0.0
Subjects (1) Method, SubjectsMethod
Subjects and collections
Subjects are the site's own grouping of CRAN packages, found by clustering. Collections are sets of packages that communities declare, such as the tidyverse.
- Subjects
- Subjects are found by clustering the words of current CRAN packages and the packages they use. No one edits them by hand.
- Collections
- Collections are sets that communities declare, through a package that installs the set or an organization on GitHub. The site finds them by rules.
- Who made each
- Subjects are marked Site and collections Community. Subjects, collections and task views are never mixed in one list.
- The day of the data
- Subjects and collections were last worked out on 22 Oct 2026.
Cite
Package
Run in R for the authors' preferred citation:
citation("rEDM")Park, J., The Regents of the University of California, Deyle, E., & Sugihara, G. (2026). rEDM: Empirical Dynamic Modeling ('EDM') (Version 2.0.2) [Computer software]. https://doi.org/10.32614/CRAN.package.rEDMAbout
This package has no citation file, so citation() returns this entry built from DESCRIPTION.
R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
Balamuta, J. J. (2026). R Observatory: Metrics for rEDM version 2.0.2 [Data set]. HJJB, LLC. Data release v2026-10-28. https://doi.org/10.5281/zenodo.21843040
About
From data release v2026-10-28, which the citation names so these numbers can be found later.
Health
1 of 13 check platforms have warnings or errors.
r-oldrel-macos-arm64The previous release of R on macOS, arm64
Error
- Version checked
- 2.0.2
- Time taken
- 48 s
re-building of vignette outputs: Error
Error(s) in re-building vignettes:
r-devel-linux-x86_64-debian-clangThe unreleased R on Linux, x86_64, debian-clang
OK
- Version checked
- 2.0.2
- Time taken
- 230 s
r-devel-linux-x86_64-debian-gccThe unreleased R on Linux, x86_64, debian-gcc
OK
- Version checked
- 2.0.2
- Time taken
- 222 s
r-devel-linux-x86_64-fedora-clangThe unreleased R on Linux, x86_64, fedora-clang
OK
- Version checked
- 2.0.2
- Time taken
- 169 s
r-devel-linux-x86_64-fedora-gccThe unreleased R on Linux, x86_64, fedora-gcc
OK
- Version checked
- 2.0.2
- Time taken
- 190 s
r-devel-windows-x86_64The unreleased R on Windows, x86_64
OK
- Version checked
- 2.0.2
- Time taken
- 149 s
r-oldrel-macos-x86_64The previous release of R on macOS, x86_64
OK
- Version checked
- 2.0.2
- Time taken
- 204 s
r-oldrel-windows-x86_64The previous release of R on Windows, x86_64
OK
- Version checked
- 2.0.2
- Time taken
- 169 s
r-patched-linux-x86_64The patched release of R on Linux, x86_64
OK
- Version checked
- 2.0.2
- Time taken
- 216 s
r-release-linux-x86_64The current release of R on Linux, x86_64
OK
- Version checked
- 2.0.2
- Time taken
- 215 s
r-release-macos-arm64The current release of R on macOS, arm64
OK
- Version checked
- 2.0.2
- Time taken
- 57 s
r-release-macos-x86_64The current release of R on macOS, x86_64
OK
- Version checked
- 2.0.2
- Time taken
- 211 s
r-release-windows-x86_64The current release of R on Windows, x86_64
OK
- Version checked
- 2.0.2
- Time taken
- 140 s
- 1 Error
- 12 OK
Check output (1)
re-building of vignette outputs, Error on 1 platform
Error(s) in re-building vignettes:
--- re-building ‘rEDM-tutorial.Rmd’ using rmarkdown
2026-10-28 13:11:11.614 R[44729:69906] XType: Using static font registry.
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: RowCumsum(valid)
2: FindNeighbors(embedding, lib_i, pred_i, knn, exclusionRadius = exclusionRadius, validLib = validLib, libOverlap = idx$libOverlap, backend = backend, tieBreak = FALSE, verbose = verbose)
3: SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)
4: ComputeError(predictions$Observations, predictions$Predictions)
5: SweepRho(SMap(
...[truncated]...
", file, conditionMessage(e)))})
58: tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/rEDM.Rcheck/vign_test/rEDM", skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/RtmpArwcYh/file9ac22e6a09e7.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from rEDM-tutorial.Rmd:466-469 [smap_thrips]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.frame()`:
! arguments imply differing number of rows: 15, 0
---
Backtrace:
▆
1. └─rEDM::PredictNonlinear(...)
2. └─base::data.frame(Theta = theta, rho = rho)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rEDM-tutorial.Rmd' failed with diagnost
[cut here]Over time
No change since 1 Aug 2026
As a list (4)
| Changed | Worst status | OK | Notes | Warnings | Errors |
|---|---|---|---|---|---|
| 1 Aug 2026 | Error | 7 | 5 | 0 | 1 |
| 22 Apr 2026 | Note | 1 | 13 | 0 | 0 |
| 18 Apr 2026 | Error | 1 | 12 | 0 | 1 |
| 10 Mar 2026 | Note | 1 | 13 | 0 | 0 |
Since March 2026
Downloads
Method, Downloads Method Download figures count requests logged by each distribution channel. They are not counts of installs or of users, because each channel publishes its own totals and this site reads them.Downloads
- Total downloads in the last 30 days
- 899−6.8% down on the 30 days before, the worse directionIt is the sum of 3 channels: CRAN, r2u and autoCRAN.
CRAN rank
4,002 of 26,530
CRAN
844 downloads in the last 30 days
- Rank
- 4,002 of 26,530
- Change
- −7.2% down on the 30 days before, the worse direction
It is in the total. Take it out
r2u
48 downloads in the last 30 days
- Rank
- 3,243 of 30,526
- Change
- +14.3% up on the 30 days before, the better direction
It is in the total. Take it out
autoCRAN
7 downloads in the last 30 days
- Rank
- 6,587 of 29,212
- Change
- −50% down on the 30 days before, the worse direction
It is in the total. Take it out
The total is 899 downloads in the last 30 days. It is the sum of 3 channels: CRAN, r2u and autoCRAN.
Over time
Dependencies
- Needs
- 5
- Dependent packages
- 1
- Suggested by
- 0
Needs (5)
- graphics
- parallel
- RANN
- stats
- utils
- Installing it adds
- 1 package, 59 KB of source
- Of those, need compilation
- 1
Dependent packages (1)
| Package | Title | Downloads in 30 days |
|---|---|---|
| EWSmethods | Forecasting Tipping Points at the Community Level | 377 |
Code
Method, Code Method Code metrics come from reading the released source of each package version. The package is never installed, loaded or run.Code metrics
README, vignettes, a NEWS file and the shares read from its help pages. Files kept only in the repository, such as a pkgdown configuration or CI files, are read by the repository scan instead.
- Functions
- 53
- Public exports
- 13
- Lines of R code
- 2,439
- Median complexity
- 4
Functions (53)
Size and composition
Lines by kind (4,252)
| Kind | Lines | Share |
|---|---|---|
| R code | 2,439 | 57% |
| Documentation | 948 | 22% |
| Guides | 865 | 20% |
Lines by language
| Language | Lines | Share |
|---|---|---|
| R | 2,439 | 57% |
| Rd | 948 | 22% |
| Vignettes | 676 | 16% |
| Other | 189 | 4% |
Languages are counted from file extensions.
- Files
- 75
- R functions
- 53
Complexity
- Median
- 4
- Mean
- 5.94
- Highest
- 30
- Median lines per function
- 18
About complexity
Cyclomatic complexity counts the independent paths through a function: 1 is a straight line, higher is harder to test. R functions only.
Call graph figures
- R functions
- 53
- Calls
- 99
- Unconnected
- 3
- Groups
- 2
Growth (46 releases)
Release changes
Tests
The package was built and has no tests to run.
- Lines of tests
- 0
- Exports named in tests
- 0%
Test suite
- Has tests
- No
- Test frameworks
- testthat
- Test lines per line of code
- 0
Documentation
- Exports documented
- 100%
- Arguments documented
- 100%
- Return value documented
- 100%
- Help pages with examples
- 34.6%
- Examples run in checks
- 100%
Guides (1)
Other documentation
- README
- Yes, 529 words
- Release notes file
- Yes
- Help pages
- 26
- Lines of documentation
- 948
Datasets
Method, Datasets Method The datasets inside packages are read from their R objects in datasets
data/ folders when the code is analysed. Each object is described by its class, its shape and its columns, and fingerprinted so the same data can be found in other packages.data() are listed, 76,180 on CRAN and 8,045 on Bioconductor, so the list is not every file in data/.
14 datasets, 9 can be loaded by name
| Dataset | Size | Columns |
|---|---|---|
| EvergladesFlowWater flow to NE Everglades | 1,379 × 2 | Date, S12CD_ |
| Lorenz5D5-D Lorenz'96 | 1,000 × 6 | Time, V1, V2, V3, V4, V5 |
| LorenzData1000 | 1,000 × 6 | Time, V1, V2, V3, V4, V5 |
| S12CD-S333-SumFlow_ | 1,379 × 2 | Date, S12. |
| Smplx_ | 52 × 2 | X1137, X1135 |
| TentMapTime series for a tent map with mu = 2. | 999 × 2 | Time, TentMap |
| TentMapNoiseTime series of tent map plus noise. | 999 × 2 | Time, TentMap |
| ThripsApple-blossom Thrips time series | 81 × 6 | Year, Month, Thrips_ |
| block_ | 198 × 10 | time, x_ |
| circle2-D timeseries of a circle. | 200 × 3 | Time, x, y |
| circle_ | 200 × 2 | x, y |
| columnNameSpace | 100 × 6 | Time, Var. |
| paramecium_ | 71 × 3 | time, paramecium, didinium |
| sardine_ | 78 × 5 | year, anchovy, sardine, sio_ |
People
Method, People Method People on the site are the names packages give them in their Author and maintainer identity
DESCRIPTION files: authors from the author list, and the maintainer from the Maintainer field. Spellings of one name become one person only where the rules below allow it, and when in doubt the rules keep people apart.
Maintainer since 1.3.8 (2020), previously George Sugihara (1.2.3) and Joseph Park (1.2.2), author
The Regents of the University of California, an organisation
Copyright holder
Author
Author, ccp
Earlier names (15)
- Adam Clark
- Andrew Edwards
- Cameron Smith
- Erik Saberski
- Ethan White
- Hao Ye
- James Stagge
- Jane Cowles
- Jun Cai
- Masayuki Ushio
- Oliver Keyes
- Os Keyes
- Steve Munch
- Takeshi Abe
- Yair Daon
Repository
Method, figures by host Method Repository signals are the figures read from the source repository a package links to: stars, forks, issues, commits, releases and the time issues take to close. They are read from GitHub, GitLab, Codeberg and Bitbucket.Repository signals
URL and BugReports fields of its DESCRIPTION file. Read-only mirrors, the cran and bioc accounts on GitHub and git.bioconductor.org, are left out.
No repository on record
History
Method, History Method Archived is built from CRAN's archive records, its list of check deadlines and Bioconductor's package records. Every figure is counted to 28 Oct 2026, the day the data was read.Packages leaving
Archived and back
| Archived | Back | CRAN's reason | Kind |
|---|---|---|---|
| 12 Apr 2020 | 8 Jun 2020 | check problems were not corrected despite reminders | Checks not fixed |
| 16 Jan 2020 | 2 Mar 2020 | check issues were not corrected in time. 'Additional issues', also Solaris | Checks not fixed |
| Version | Released | R | Events |
|---|---|---|---|
| 2.0.2 current | 30 Aug 2026 | 4.6.1 | Fix due 31 Aug 2026 The checks were fixed and the deadline was lifted. |
| 2.0.1 | 31 Jul 2026 | 4.6.1 | |
| 1.15.4 | 6 Apr 2024 | 4.3.3 | |
| 1.15.3 | 10 Jan 2024 | 4.3.2 | |
| 1.15.1 | 10 Nov 2023 | 4.3.2 | |
| 1.15.0 | 23 Oct 2023 | 4.3.1 | |
| 1.14.3 | 7 Jul 2023 | 4.3.1 | |
| 1.14.0 | 9 Jan 2023 | 4.2.2 |
Earlier versions (38)
| Version | Released | R | Events |
|---|---|---|---|
| 1.13.1 | 6 Aug 2022 | 4.2.1 | |
| 1.13.0 | 22 Jun 2022 | 4.2.0 | |
| 1.12.2 | 1 Jun 2022 | 4.2.0 | |
| 1.12.0 | 15 May 2022 | 4.2.0 | |
| 1.11.0 | 15 Apr 2022 | 4.1.3 | |
| 1.10.3 | 31 Mar 2022 | 4.1.3 | |
| 1.10.2 | 13 Feb 2022 | 4.1.2 | |
| 1.10.1 | 22 Jan 2022 | 4.1.2 | |
| 1.10.0 | 19 Dec 2021 | 4.1.2 | |
| 1.9.3 | 16 Oct 2021 | 4.1.1 | |
| 1.9.2 | 16 Sep 2021 | 4.1.1 | |
| 1.9.1 | 8 Aug 2021 | 4.1.0 | |
| 1.9.0 | 22 Jun 2021 | 4.1.0 | |
| 1.8.2 | 3 May 2021 | 4.0.5 | |
| 1.8.1 | 22 Mar 2021 | 4.0.4 | |
| 1.8.0 | 27 Feb 2021 | 4.0.4 | |
| 1.7.5 | 25 Jan 2021 | 4.0.3 | |
| 1.7.4 | 11 Jan 2021 | 4.0.3 | |
| 1.7.3 | 4 Jan 2021 | 4.0.3 | |
| 1.7.1 | 4 Dec 2020 | 4.0.3 | |
| 1.7.0 | 14 Nov 2020 | 4.0.3 | |
| 1.6.1 | 20 Oct 2020 | 4.0.3 | |
| 1.5.0 | 6 Jul 2020 | 4.0.0 | |
| 1.3.8.5 | 23 Jun 2020 | 4.0.0 | |
| 1.3.8.2 | 16 Jun 2020 | 4.0.0 | |
| 1.3.8 | 8 Jun 2020 | 4.0.0 | Back on CRAN 8 Jun 2020 Maintainer: Joseph Park Licence: BSD_2_clause + file LICENSE |
| 1.2.3 | 6 Mar 2020 | 3.6.3 | Archived 12 Apr 2020 “check problems were not corrected despite reminders” Maintainer: George Sugihara |
| 1.2.2 | 2 Mar 2020 | 3.6.3 | Back on CRAN 2 Mar 2020 Maintainer: Joseph Park |
| 0.7.3 | 25 Nov 2019 | 3.6.1 | Archived 16 Jan 2020 “check issues were not corrected in time. 'Additional issues', also Solaris” |
| 0.7.2 | 10 Dec 2018 | 3.5.0 | Maintainer: George Sugihara |
| 0.7.1 | 20 Jun 2018 | 3.5.0 | |
| 0.6.9 | 5 Dec 2017 | 3.4.3 | |
| 0.6.5 | 7 Nov 2017 | 3.4.2 | |
| 0.5.4 | 16 Nov 2016 | 3.3.2 | Licence: file LICENSE |
| 0.5.3 | 22 Oct 2016 | 3.3.1 | |
| 0.4.7 | 10 Mar 2016 | 3.2.4 | |
| 0.4.5 | 7 Mar 2016 | 3.2.3 | |
| 0.4.4 | 5 Mar 2016 | 3.2.3 |
Release notes (2.0.2)
- Version 2.0.2 is a bugfix relase. Parameter
Eis required as in previous releases.Embed()returns adata.framewith named columns as in previous releases. Neighbor ties inSimplexare resolved.