mrbayes 0.5.0 to 0.5.3
CRANRecord of 0.5.0Record of 0.5.3Both records side by side
- 0.5.0 and 0.5.3
- between them
- other releases
- daily mean, in 30-day steps
- after this copy’s series ends on 26 Oct 2026
- Time between
- 1,751 days2 releases between
- Advisories, method
Method
Security advisories
Advisories come from the R Consortium advisory database, a community record of security problems in R packages, as OSV publishes it.
- The copy
- The record is read once a day. The data is published under the Apache License 2.0 and is credited on the advisories list.
- Box under the name
- Under the package's name, a box names any advisory that affects the current release, with its fix or that there is none.
- Ranges
- Advisories state ranges, such as from 0.9.12 up to but not including 1.8.8. Each range is checked against every version CRAN has published, using the version rules R itself uses, so a release that came out after the advisory was written is still caught by its range.
- Not the package
- The rating is for the library flaw itself, not for how exposed the R package is, and it is never added up into a figure for the package.
- None knownfor either release
- Exports, method
- No changebetween the two
- Dependencies
- 16 changes2 added, 11 removed, 2 bounds, 1 moved2 added, 11 removed
- Licence
- SameGPL-3
- Maintainer
- Changednow Tom Palmer
Downloads while newest
Method, downloads Method Download figures count requests logged by each distribution channel. They are not counts of installs or of users, because each channel publishes its own totals and this site reads them.Downloads
| Release | Days newest | Days counted | CRAN downloads | Daily mean |
|---|---|---|---|---|
| 0.5.3 8 Jul to 28 Oct 2026, still the newest | 113 | 111 | 1,416 | 13 |
| 0.5.0 21 Sep to 1 Oct 2021 | 11 | 257 | 23 |
Daily mean while newest, 0.5.3 −45.4% down since 0.5.0
Counted on the CRAN mirror from each release's day to the day before the next release. This copy's daily series ends on 26 Oct 2026, so a span that runs past it is counted to that day and its daily mean covers the days counted. Other channels repackage on their own schedules, so they are not split by release.
Dependencies
Method, dependencies Method Dependent packages are other packages that list this one under Reverse dependencies
Depends, Imports or LinkingTo in their DESCRIPTION file. Those fields list the packages a package needs to install, so dependents break if this one is archived or broken.Suggests install and run without it, and use it for tests, examples or an optional feature. They are counted as Suggested by, never among the dependents, and a package that also lists it under one of the three fields is a dependent and is not counted again.
- added
- removed
- bound or field changed
| Package | Field | 0.5.0 | 0.5.3 | |
|---|---|---|---|---|
| changed | R | Depends | >= 3.5.0 | >= 4.3.0 |
| removed | bayesmeta | Suggests | any version | – |
| removed | bookdown | Suggests | any version | – |
| changed | DescTools | Suggests to Imports | any version | any version |
| removed | foreign | Suggests | any version | – |
| removed | ggmcmc | Suggests | any version | – |
| removed | ggplot2 | Suggests | any version | – |
| removed | kableExtra | Suggests | any version | – |
| removed | knitr | Suggests | any version | – |
| removed | plyr | Imports | any version | – |
| added | RcppParallel | Imports | – | >= 5.0.1 |
| added | RcppParallel | LinkingTo | – | >= 5.0.1 |
| removed | roxygen2 | Suggests | any version | – |
| changed | rstantools | Imports | >= 2.0.0 | >= 2.4.0 |
| removed | tidyverse | Suggests | any version | – |
| removed | utils | Suggests | any version | – |
Side by side
| Measure | 0.5.0 | 0.5.3 | Change |
|---|---|---|---|
| R | >= 3.5.0 | >= 4.3.0 | changed |
| Imports | 5 packages | 6 packages | +1 −1, 2 bounds |
| LinkingTo | 5 packages | 6 packages | +1 |
| Suggests | 14 packages | 3 packages | −10, 1 bound |
Licence and people
Method, licences Method Licence figures come from the Licences
License field of each package's DESCRIPTION file, read the way R itself reads it. No licence file is opened.tools::analyze_license() and R's own licence database, as CRAN's checks read it.| is read, so one string can offer two families.
| Part | 0.5.0 | 0.5.3 | |
|---|---|---|---|
| changed | Maintainer | Okezie Uche-Ikonne | Tom Palmer |
| changed | Okezie Uche-Ikonne | aut, cre | aut |
| changed | Tom Palmer | aut | aut, cre |
Side by side
| Measure | 0.5.0 | 0.5.3 | Change |
|---|---|---|---|
| Licence | GPL-3 | GPL-3 | |
| Maintainer | Okezie Uche-Ikonne | Tom Palmer | changed |
| People named | Okezie Uche-Ikonne, Frank Dondelinger, Tom Palmer | Okezie Uche-Ikonne, Frank Dondelinger, Tom Palmer |
Code
Method, code Method Code metrics come from reading the released source of each package version. The package is never installed, loaded or run.Code metrics
README, vignettes, a NEWS file and the shares read from its help pages. Files kept only in the repository, such as a pkgdown configuration or CI files, are read by the repository scan instead.
| Measure | 0.5.0 | 0.5.3 | Change |
|---|---|---|---|
| Lines of R code | 2,334 | 2,239 | −95 down |
| Lines of compiled code | 2,489 | 3,106 | +617 up |
| Files | 77 | 78 | +1 up |
| Internal functions | 13 | 12 | −1 down |
| Mean complexity | 3.8 | 5.4 | +1.6 up |
| Highest complexity | 14 | 25 | +11 up |
| Download size | 85 KB | 57 KB | −28 KB down |
| Source, unpacked | 350 KB | 327 KB | −23 KB down |
1 other figure of the code is the same in both.
Side by side
| Measure | 0.5.0 | 0.5.3 | Change |
|---|---|---|---|
| Lines of R code | 2,334 | 2,239 | −95 |
| Lines of compiled code | 2,489 | 3,106 | +617 |
| Files | 77 | 78 | +1 |
| Public exports | 13 | 13 | |
| Internal functions | 13 | 12 | −1 |
| Mean complexity | 3.8 | 5.4 | +1.6 |
| Highest complexity | 14 | 25 | +11 |
| Download size | 85 KB | 57 KB | −28 KB |
| Source, unpacked | 350 KB | 327 KB | −23 KB |
| Analysed with | rpkg-analyzer 0.5.2 | rpkg-analyzer 0.5.2 |
Tests
Method, tests Method Test coverage is measured by downloading each CRAN package's current source file, installing its dependencies, building it and running its tests under covr.Test coverage
| Measure | 0.5.0 | 0.5.3 | Change |
|---|---|---|---|
| Test cases | 49 | 48 | −1 down |
| Lines of tests | 1,135 | 1,212 | +77 up |
| Test lines per line of code | 0.49 | 0.54 | +0.05 up |
1 other figure of the tests is the same in both.
Side by side
| Measure | 0.5.0 | 0.5.3 | Change |
|---|---|---|---|
| Lines run by tests | Not measured | Not measured, the run timed out | |
| Test cases | 49 | 48 | −1 |
| Lines of tests | 1,135 | 1,212 | +77 |
| Test lines per line of code | 0.49 | 0.54 | +0.05 |
| Exports named in tests | 92.3% | 92.3% |
Documentation
| Measure | 0.5.0 | 0.5.3 | Change |
|---|---|---|---|
| Lines of documentation | 874 | 918 | +44 up |
4 other figures of the documentation are the same in both.
Side by side
| Measure | 0.5.0 | 0.5.3 | Change |
|---|---|---|---|
| Exports documented | 100.0% | 100.0% | |
| Arguments documented | 100.0% | 100.0% | |
| Return value documented | 100.0% | 100.0% | |
| Lines of documentation | 874 | 918 | +44 |
| Lines of guides | 0 | 0 |
Files changed
- Files changed
- 73over 3 releases
- Lines added
- 5,299
- Lines deleted
- 4,574
Most changed files (12 of 73)
| File | Lines added | Lines deleted |
|---|---|---|
src/stanExports_mregger.h | 667 | 561 |
src/stanExports_mrradialegger.h | 636 | 551 |
src/stanExports_mvmregger.h | 557 | 395 |
src/stanExports_mvmrivw.h | 437 | 295 |
src/stanExports_mrivw.h | 393 | 271 |
R/mvmr_ivw_rjags.R | 168 | 176 |
tests/testthat/test-mr_radialegger_rjags.R | 184 | 159 |
R/mvmr_egger_rjags.R | 141 | 174 |
tests/testthat/test-mvmr_egger_stan.R | 155 | 147 |
tests/testthat/test-mvmr_ivw_stan.R | 154 | 146 |
tests/testthat/test-mvmr_ivw_rjags.R | 147 | 139 |
tests/testthat/test-mvmr_egger_rjags.R | 126 | 144 |
Each release is counted against the release before it, so a line changed twice counts twice.
Release notes
From the NEWS file of 0.5.3. Only the section for the newest release on record is kept.
- The minimum version of R is now 4.3.0. This is required by the distributional package (a transitive dependency via rstan → loo → posterior), which uses
chooseOpsMethod()(introduced in R 4.3.0). - Fixes for segfault on macOS ARM runners on r-universe.
- Bump roxygen2 to 8.0.0.
- Fix hardcoded 3-exposure loop in MVMR-Egger print/summary.
- Fix broken "joint" prior branch in
mvmr_egger_rjags(). - Fix sigma parameterization in
mr_radialegger_rjags(). - Fix wrong function name in Stan MVMR error messages.
- Complete the sigma < 1 warning message in egger rjags functions.
- Fix
bmi_insulincolumn count in documentation. - Fix comment typos in egger rjags functions.
- Constrain prior to 1-3 in
mvmregger.stan. - Remove no-op prior self-assignment in rjags functions.
- Check for rjags before class in MVMR rjags functions.
- Widen non-informative intercept prior in
mregger.stan.
Unchanged and not compared
Exports and licence are the same in both releases. No advisory is known for either release.
Checks, the install tree, dependents and the repository describe the package as it is now, so they are on the package page.