peco

Description

Our approach provides a way to assign continuous cell cycle phase using scRNA-seq data, and consequently, allows to identify cyclic trend of gene expression levels along the cell cycle. This package provides method and training data, which includes scRNA-seq data collected from 6 individual cell lines of induced pluripotent stem cells (iPSCs), and also continuous cell cycle phase derived from FUCCI fluorescence imaging data.

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People

• Chiaowen Joyce Hsiao author maintainer
• John Blischak contributor
• Peter Carbonetto contributor
• Matthew Stephens author