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SplicingFactory

Bioc current

Splicing Diversity Analysis for Transcriptome Data

v1.20.0 · software · GPL-3 + file LICENSE
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Release Lineage

Entered 3.13 · May 20, 2021

Current · Requires R 4.6

1.0 In 11 of 49 releases 3.23

Description

The SplicingFactory R package uses transcript-level expression values to analyze splicing diversity based on various statistical measures, like Shannon entropy or the Gini index. These measures can quantify transcript isoform diversity within samples or between conditions. Additionally, the package analyzes the isoform diversity data, looking for significant changes between conditions.

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Topics

Software › ResearchField › Transcriptomics
Software › Technology › Sequencing › RNASeq
Software › BiologicalQuestion › DifferentialSplicing
Software › BiologicalQuestion › AlternativeSplicing
Software › BiologicalQuestion › TranscriptomeVariant

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