Skip to content

HMMcopy

Bioc current

Copy number prediction with correction for GC and mappability bias for HTS data

v1.54.0 · software · GPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.11 · Oct 3, 2012

Current · Requires R 4.6

1.0 In 28 of 49 releases 3.23

Description

Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.

Code & tests

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Technology › Sequencing
Software › WorkflowStep › Preprocessing
Software › WorkflowStep › Visualization
Software › AssayDomain › CopyNumberVariation
Software › Technology › Microarray

Depended on by (2)

Bioconductor (2)

qsea mesa

People

Daniel Lai