Aerith
Bioc currentvisualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics
Release Lineage
Entered 3.23 · Apr 29, 2026
Current · Requires R 4.6
Description
Visualisation of peptide isotopic peaks and SIP peptide spectra match (PSM). Filtration of high quality PSM. Accurate isotopic abundance calculation of peptide and metabolites. Visualisation of SIP proteomics results.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
529 85 exported
Complexity
1.6 avg / 19 max
Call network
529 nodes / 156 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
20,062
Files
198
Compiled share
61.2%
Has compiled src
Yes
Language breakdown
API
Exported functions
85
Internal functions
10
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.08
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
8
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
1 externalC++17
C++ standard
C++17
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2026-05-01
Latest release
2026-05-01
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 90 (3 internal)includes a package overview page
- Examples that run
- 100%85 run in a plain check
- Exported functions with examples
- 98%
- Documented parameters
- 99%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
Checks run against github.com/xyz1396/aerith on 2026-10-11.
No development-tooling practices detected in the upstream repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| demo.FT1 | vector | 65,037 elements | No other package |
| demo.pro.cluster | data.frame | 2,000 × 8 | No other package |
| demo.psm | data.frame | 2,000 × 18 | No other package |
| demo_decoy.Spe2Pep | – | – | – |
| demo_target.Spe2Pep | – | – | – |
| demo_target_decoy.FT1 | vector | 40,537 elements | No other package |
Topics
People
- Yi Xiong author maintainer
Cite
Cite this package
Run in R for the authors' entry:
citation("Aerith")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1021/acs.analchem.5c03207.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.