Packages
Downloads
Topic: Spatial or Transcriptomics
biocViews term
- AnnotationData
view:AnnotationData - Software
view:Software - GeneExpression
view:GeneExpression - Sequencing
view:Sequencing - Visualization
view:Visualization - ImmunoOncology
view:ImmunoOncology - RNASeq
view:RNASeq - Genetics
view:Genetics - DifferentialExpression
view:DifferentialExpression - DataImport
view:DataImport - SingleCell
view:SingleCell - AffymetrixChip
view:AffymetrixChip - Microarray
view:Microarray - ExperimentData
view:ExperimentData - Transcriptomics
view:Transcriptomics× remove - Clustering
view:Clustering - Preprocessing
view:Preprocessing - Homo_sapiens
view:Homo_sapiens - Infrastructure
view:Infrastructure - QualityControl
view:QualityControl - Proteomics
view:Proteomics - Classification
view:Classification - Normalization
view:Normalization - Transcription
view:Transcription - MultipleComparison
view:MultipleComparison - StatisticalMethod
view:StatisticalMethod - ChipDb
view:ChipDb - GeneSetEnrichment
view:GeneSetEnrichment - Network
view:Network - Coverage
view:Coverage - DataRepresentation
view:DataRepresentation - oligo
view:oligo - Regression
view:Regression - MassSpectrometry
view:MassSpectrometry - Annotation
view:Annotation - Pathways
view:Pathways - GraphAndNetwork
view:GraphAndNetwork - Metabolomics
view:Metabolomics - Homo_sapiens_Data
view:Homo_sapiens_Data - MicroarrayData
view:MicroarrayData - DNAMethylation
view:DNAMethylation - GeneRegulation
view:GeneRegulation - cdf
view:cdf - Mus_musculus
view:Mus_musculus - ExperimentHub
view:ExperimentHub - BSgenome
view:BSgenome - Epigenetics
view:Epigenetics - Alignment
view:Alignment - FunctionalGenomics
view:FunctionalGenomics - SystemsBiology
view:SystemsBiology - probe
view:probe - SequencingData
view:SequencingData - ChIPSeq
view:ChIPSeq - DimensionReduction
view:DimensionReduction - Bayesian
view:Bayesian - CancerData
view:CancerData - SNP
view:SNP - ExpressionData
view:ExpressionData - BiomedicalInformatics
view:BiomedicalInformatics - Spatial
view:Spatial× remove
Category
People
AI tools
AI coding tool
- At least one found
ai:any - Claude Code
ai:claude - GitHub Copilot
ai:copilot - Gemini CLI
ai:gemini - Cursor
ai:cursor - Antigravity
ai:antigravity - Codex
ai:codex - Jules
ai:jules - Trae
ai:trae - AGENTS.md, for any agent
ai:agents-md
AI tool found as
- Seen in the repository
ai-found:file - Named in an ignore file
ai-found:ignore - Pull request by its own account
ai-found:pr - Commits by it or crediting it
ai-found:commits
Model named in commits
Code
Source repository on GitHub known
Dates
Release: Release 2.8 (2011)
In the current release or not
- In the current release
- Removed after an earlier release
status:removed - Never in a release
status:unreleased - All
status:all
Bioconductor release
- Current release
- Every package ever seen
release:all - Release 3.23 (2026)
release:3.23 - Release 3.22 (2025)
release:3.22 - Release 3.21 (2025)
release:3.21 - Release 3.20 (2024)
release:3.20 - Release 3.19 (2024)
release:3.19 - Release 3.18 (2023)
release:3.18 - Release 3.17 (2023)
release:3.17 - Release 3.16 (2022)
release:3.16 - Release 3.15 (2022)
release:3.15 - Release 3.14 (2021)
release:3.14 - Release 3.13 (2021)
release:3.13 - Release 3.12 (2020)
release:3.12 - Release 3.11 (2020)
release:3.11 - Release 3.10 (2019)
release:3.10 - Release 3.9 (2019)
release:3.9 - Release 3.8 (2018)
release:3.8 - Release 3.7 (2018)
release:3.7 - Release 3.6 (2017)
release:3.6 - Release 3.5 (2017)
release:3.5 - Release 3.4 (2016)
release:3.4 - Release 3.3 (2016)
release:3.3 - Release 3.2 (2015)
release:3.2 - Release 3.1 (2015)
release:3.1 - Release 3.0 (2014)
release:3.0 - Release 2.14 (2014)
release:2.14 - Release 2.13 (2013)
release:2.13 - Release 2.12 (2013)
release:2.12 - Release 2.11 (2012)
release:2.11 - Release 2.10 (2012)
release:2.10 - Release 2.9 (2011)
release:2.9 - Release 2.8 (2011)
release:2.8× remove - Release 2.7 (2010)
release:2.7 - Release 2.6 (2010)
release:2.6 - Release 2.5 (2009)
release:2.5 - Release 2.4 (2009)
release:2.4 - Release 2.3 (2008)
release:2.3 - Release 2.2 (2008)
release:2.2 - Release 2.1 (2007)
release:2.1 - Release 2.0 (2007)
release:2.0 - Release 1.9 (2006)
release:1.9 - Release 1.8 (2006)
release:1.8 - Release 1.7 (2005)
release:1.7 - Release 1.6 (2005)
release:1.6 - Release 1.5 (2004)
release:1.5 - Release 1.4 (2004)
release:1.4 - Release 1.3 (2003)
release:1.3 - Release 1.2 (2003)
release:1.2 - Release 1.1 (2002)
release:1.1 - Release 1.0 (2001)
release:1.0
4 packages on Bioconductor tagged Spatial or Transcriptomics, most distinct IPs first
Spatial and Transcriptomics in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| topGO Enrichment Analysis for Gene OntologyFederico Marini | Federico Marini | software | 28 Apr 2026 | 3,228 | 48 |
| made4 Multivariate analysis of microarray data using ADE4Aedin Culhane | Aedin Culhane | software | 28 Apr 2026 | 1,279 | 38 |