Packages

146 packages on Bioconductor tagged ExperimentData or Epigenetics or Mus_musculus, most distinct IPs first

ExperimentData, Epigenetics and Mus_musculus in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	13,520	42
TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,192	75
BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,152	58
msdata Various Mass Spectrometry raw data example filesSteffen Neumann	Steffen Neumann	experiment	5 May 2026	1,252	0
mouse4302.db Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,058	43
EnsDb.Mmusculus.v79 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	955	81
mouse4302cdf mouse4302cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	944	42
TxDb.Mmusculus.UCSC.mm9.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	893	75
ChAMPdata Data Packages for ChAMP packageYuan Tian	Yuan Tian	experiment	5 May 2026	816	11
BSgenome.Mmusculus.UCSC.mm39 Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	669	58
RforProteomics Companion package to the 'Using R and Bioconductor for proteomics data analysis' publicationLaurent Gatto	Laurent Gatto	experiment	5 May 2026	566	144
FlowSorted.Blood.450k Illumina HumanMethylation data on sorted blood cell populationsAndrew E Jaffe	Andrew E Jaffe	experiment	5 May 2026	558	144
mouse4302probe Probe sequence data for microarrays of type mouse4302Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	472	42
hapmapsnp6 Sample data - Hapmap SNP 6.0 AffymetrixBenilton Carvalho	Benilton Carvalho	experiment	5 May 2026	448	0
illuminaMousev2.db Illumina MouseWG6v2 annotation data (chip illuminaMousev2)Mark Dunning	Mark Dunning	annotation	no date on record	439	43
mogene10sttranscriptcluster.db Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	422	43
Mus.musculus Annotation package for the Mus.musculus objectBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	416	82
BSgenome.Mmusculus.UCSC.mm9 Full genome sequences for Mus musculus (UCSC version mm9)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	398	58
ELMER.data Data for the ELMER packageTiago Chedraoui Silva	Tiago Chedraoui Silva	experiment	5 May 2026	390	11
davidTiling Data and analysis scripts for David, Huber et al. yeast tiling array paperWolfgang Huber	Wolfgang Huber	experiment	5 May 2026	384	76
illuminaMousev1.db Illumina MouseWG6v1 annotation data (chip illuminaMousev1)Mark Dunning	Mark Dunning	annotation	no date on record	378	43
mouse430a2.db Affymetrix Affymetrix Mouse430A_2 Array annotation data (chip mouse430a2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	376	43
oligoData Dataset samples for the oligo packageBenilton Carvalho	Benilton Carvalho	annotation	no date on record	372	53
GeuvadisTranscriptExpr Data package with transcript expression and bi-allelic genotypes from the GEUVADIS projectMalgorzata Nowicka	Malgorzata Nowicka	experiment	5 May 2026	367	0
moe430a.db Affymetrix Affymetrix MOE430A Array annotation data (chip moe430a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	367	43
htmg430pmprobe Probe sequence data for microarrays of type htmg430pmBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	342	42
illuminaMousev1p1.db Illumina MouseWG6v1p1 annotation data (chip illuminaMousev1p1)Mark Dunning	Mark Dunning	annotation	no date on record	342	43
lumiMouseAll.db Illumina Mouse Illumina expression annotation data (chip lumiMouseAll)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	341	43
mogene20sttranscriptcluster.db Affymetrix mogene20 annotation data (chip mogene20sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	341	43