Packages

229 packages on Bioconductor tagged AnnotationData or BSgenome or Classification, most distinct IPs first

AnnotationData, BSgenome and Classification in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
ensembldb Utilities to create and use Ensembl-based annotation databasesJohannes Rainer	Johannes Rainer	software	25 May 2026	11,000	80
DirichletMultinomial Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome DataMartin Morgan	Martin Morgan	software	28 Sep 2026	6,490	9
dada2 Accurate, high-resolution sample inference from amplicon sequencing dataBenjamin Callahan	Benjamin Callahan	software	28 Apr 2026	4,206	75
fastseg fastseg - a fast segmentation algorithmAlexander Blume	Alexander Blume	software	28 Apr 2026	1,884	13
MLInterfaces Uniform interfaces to R machine learning procedures for data in Bioconductor containersVincent Carey	Vincent Carey	software	28 Apr 2026	1,628	120
hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,618	42
cn.mops cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil	Gundula Povysil	software	28 Apr 2026	1,256	30
hgu95av2cdf hgu95av2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,217	42
hgu95av2probe Probe sequence data for microarrays of type hgu95av2Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,164	42
hgu133acdf hgu133acdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	971	42
epigenomix Epigenetic and gene transcription data normalization and integration with mixture modelsHans-Ulrich Klein	Hans-Ulrich Klein	software	28 Apr 2026	963	97
mouse4302cdf mouse4302cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	944	42
hgu133aprobe Probe sequence data for microarrays of type hgu133aBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	939	42
drosophila2probe Probe sequence data for microarrays of type drosophila2Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	921	42
logicFS Identification of SNP InteractionsHolger Schwender	Holger Schwender	software	28 Apr 2026	878	12
messina Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problemsMark Pinese	Mark Pinese	software	28 Apr 2026	826	32
BadRegionFinder BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverageSarah Sandmann	Sarah Sandmann	software	12 May 2026	816	97
hgu133a2cdf hgu133a2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	675	42
geva Gene Expression Variation Analysis (GEVA)Itamar José Guimarães Nunes	Itamar José Guimarães Nunes	software	28 Apr 2026	649	10
SCFA SCFA: Subtyping via Consensus Factor AnalysisDuc Tran	Duc Tran	software	28 Apr 2026	632	60
rae230aprobe Probe sequence data for microarrays of type rae230aBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	624	42
hgu133plus2probe Probe sequence data for microarrays of type hgu133plus2Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	537	42
soybeancdf soybeancdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	487	42
hgu95acdf hgu95acdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	479	42
mouse4302probe Probe sequence data for microarrays of type mouse4302Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	472	42
soybeanprobe Probe sequence data for microarrays of type soybeanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	420	42
wheatprobe Probe sequence data for microarrays of type wheatBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	416	42
riceprobe Probe sequence data for microarrays of type riceBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	410	42
poplarprobe Probe sequence data for microarrays of type poplarBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	405	42
rhesusprobe Probe sequence data for microarrays of type rhesusBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	405	42