Packages

122 packages on Bioconductor tagged AffymetrixChip or Transcription or SingleCell, most distinct IPs first

AffymetrixChip, Transcription and SingleCell in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
HDF5Array HDF5 datasets as array-like objects in RHervé Pagès	Hervé Pagès	software	28 Apr 2026	20,537	28
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,618	42
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,605	43
hugene10sttranscriptcluster.db Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	1,302	43
hgu95av2cdf hgu95av2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,217	42
hgu95av2probe Probe sequence data for microarrays of type hgu95av2Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,164	42
Harman The removal of batch effects from datasets using a PCA and constrained optimisation based techniqueJason Ross	Jason Ross	software	28 Apr 2026	975	11
hgu133acdf hgu133acdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	971	42
hgu133aprobe Probe sequence data for microarrays of type hgu133aBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	939	42
hgu219.db Affymetrix Human Genome 219 Plate annotation data (chip hgu219)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	879	43
hgu95a.db Affymetrix Affymetrix HG_U95A Array annotation data (chip hgu95a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	809	43
hgu133a2.db Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	687	43
hgu133a2cdf hgu133a2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	675	42
hu6800.db Affymetrix Affymetrix Hu6800 Array annotation data (chip hu6800)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	666	43
hgu95av2 Affymetrix Human Genome U95 Set Annotation Data (hgu95av2)Biocore Data Team	Biocore Data Team	annotation	no date on record	654	0
hugene20sttranscriptcluster.db Affymetrix hugene20 annotation data (chip hugene20sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	652	43
hoodscanR Spatial cellular neighbourhood scanning in RNing Liu	Ning Liu	software	29 Oct 2026	642	109
HIPPO Heterogeneity-Induced Pre-Processing tOolTae Kim	Tae Kim	software	28 Apr 2026	592	72
hta20transcriptcluster.db Affymetrix hta20 annotation data (chip hta20transcriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	568	43
HGC A fast hierarchical graph-based clustering methodXGlab	XGlab	software	28 Apr 2026	549	46
hgu133plus2probe Probe sequence data for microarrays of type hgu133plus2Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	537	42
hgu95acdf hgu95acdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	479	42
HuBMAPR Interface to 'HuBMAP'Christine Hou	Christine Hou	software	5 Jul 2026	478	33
hgu133b.db Affymetrix Affymetrix HG-U133B Array annotation data (chip hgu133b)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	451	43
hugene11sttranscriptcluster.db Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	444	43
hugene21sttranscriptcluster.db Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	425	43
HVP Hierarchical Variance PartitioningWei Xin Chan	Wei Xin Chan	software	28 Apr 2026	419	8
huex10sttranscriptcluster.db Affymetrix huex10 annotation data (chip huex10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	417	43