R Observatory: Metrics for ORCME version 2.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ORCME

2.0.2Package record

Order Restricted Clustering for Microarray Experiments

0packages depend

2.2Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Rudradev SenguptaCRAN page ↗

Provides clustering of genes with similar dose response (or time course) profiles. It implements the method described by Lin et al. (2012).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ORCME", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-orcme

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ORCME

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ORCME

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Rudradev Sengupta <rudradev.sengupta@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adetayo",
                      family = "Kasim",
                      role = "aut"),
               person(given = "Martin",
                      family = "Otava",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Verbeke",
                      role = "aut"),
               person(given = "Rudradev",
                      family = "Sengupta",
                      role = "cre",
                      email = "rudradev.sengupta@uhasselt.be"))
as necessary.

Additional issues

donttest

CRAN check page ↗

Slowest check: 53 s · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.2

READMENoVignettesNoNEWSYes · 67% structuredCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 8
Examples that run: 100%8 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 88%

How these are measured

Downloads

2.2K

CRAN downloads in the past year

Rank #21,866 · ~6/day · ~185/mo

Releases R versions

Daily download trend is not available in this view yet.

24830 days

60390 days

2.2K1 year

Compare downloads with other packages →

Also on67 r2u2 autocran1K conda_forge64 c2d4u

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Installing ORCME adds 1 package (1 with compiled code, 150 KB of source tarballs). Heaviest: Iso 150 KB.

Depends (1)

R >= 2.10

Imports (1)

Iso

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (3)

Adetayo Kasim

Martin Otava

Tobias Verbeke

Maintainer since 2.0.2 (2015), previously Martin Otava (1.0 to 2.0.1)

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
2.0.2Latest
record
2015-07-31 · current release · diff ↗
R
R 3.2.0 released · 2015-04-16
2.0.1
record
2014-07-16 · diff ↗
2.0
record
2014-05-22 · diff ↗
R
R 3.1.0 released · 2014-04-10

Show 7 earlier eventsHide 7 earlier events

1.2.1
record
2013-05-24 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.2
record
2012-09-18 · diff ↗
R
R 2.15.0 released · 2012-03-30
1.1
record
2012-02-10 · diff ↗
1.0
record
2011-11-23
R
R 2.14.0 released · 2011-10-31

Package metadata

First published: 2011-11-23
Total releases: 7 / 15 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 68 KB / 2 files
Download size: 80 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ORCME")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ORCME version 2.0.2 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →