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# Packages

Search: "view:Spatial view:MicroarrayData view:DimensionReduction release:2.8"

The search reads these keywords as filters. Other words are searched as written.

- `license:MIT`: the licence family, by its name or an old keyword such as GPL
- `downloads:>1000`: at least that many distinct IPs a month
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- `maintainer:"Hadley Wickham"`: the packages a person maintains now. Alone, with no catalogue in the address, their page
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- `ai:claude`: packages whose repository shows signs of that AI coding tool, ai:any of any tool
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- `release:3.22`: the packages of a Bioconductor release, or release:all for every package ever seen
- `status:removed`: Bioconductor packages removed after an earlier release, status:unreleased never in one
- `-checks:failing`: a minus before checks, license, view, maintainer, owner, ai, ai-model, letter, tests or category leaves those packages out, and before compiled, deadline or repo gives the other answer
- `in:bioc`: a catalogue: all, cran, bioc, archived, or datasets for Datasets' search
- `sort:downloads`: an order: name, downloads, updated, or relevance for words alone

Catalogue: Bioconductor.
- Bioconductor release: Release 2.8 (2011)
- biocViews term: Spatial
- biocViews term: MicroarrayData
- biocViews term: DimensionReduction
- Topic page: [Spatial](/topics/bioc/Spatial.md)
- Topic page: [MicroarrayData](/topics/bioc/MicroarrayData.md)
- Topic page: [DimensionReduction](/topics/bioc/DimensionReduction.md)

14 packages on Bioconductor tagged Spatial or MicroarrayData or DimensionReduction, most distinct IPs first.

To search, add ?q=WORDS. To pick a catalogue, add catalogue=all, catalogue=cran or catalogue=bioc. To order the list, add sort=name, category, published, downloads, dependencies and order=asc or order=desc. Filters for Bioconductor: status (In the current release or not), release (Bioconductor release), category (Category), view (biocViews term), min_downloads (Distinct IPs a month), letter (First letter), license (Licence family offered), repository (Source repository on GitHub known), published_since (Latest version published on or after), maintainer (Maintainer), owner (Repository owner on GitHub), ai (AI coding tool), ai_found (AI tool found as), ai_model (Model named in commits). view takes up to three terms joined by commas, and lists packages tagged with any of them. min_downloads takes any whole number. maintainer takes a person's whole name and owner a GitHub login. ai takes any or a tool's key, ai_found file, ignore, pr or commits, and ai_model a model family's key, with the values and counts the page offers. not_ before the name of letter, license, check, task_view, tests, maintainer, owner, ai, ai_model, category or view leaves those packages out, as in not_check=problems.

| Package | Maintainer | Category | Latest version | Distinct IPs a month (sorted, high to low) | Needs |
| --- | --- | --- | --- | ---: | ---: |
| [made4](/bioc/made4.md) Multivariate analysis of microarray data using ADE4 | Aedin Culhane | software | 28 Apr 2026 | 1,279 | 38 |
| [CoGAPS](/bioc/CoGAPS.md) Coordinated Gene Activity in Pattern Sets | Elana J. Fertig | software | 28 Apr 2026 | 959 | 94 |
| [RDRToolbox](/bioc/RDRToolbox.md) A package for nonlinear dimension reduction with Isomap and LLE. | Christoph Bartenhagen | software | 28 Apr 2026 | 782 | 35 |
| [FlowSorted.Blood.450k](/bioc/FlowSorted.Blood.450k.md) Illumina HumanMethylation data on sorted blood cell populations | Andrew E Jaffe | experiment | 5 May 2026 | 558 | 144 |
| [davidTiling](/bioc/davidTiling.md) Data and analysis scripts for David, Huber et al. yeast tiling array paper | Wolfgang Huber | experiment | 5 May 2026 | 384 | 76 |
| [Hiiragi2013](/bioc/Hiiragi2013.md) Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages | Wolfgang Huber | experiment | 23 Jun 2026 | 338 | 67 |
| [pd.atdschip.tiling](/bioc/pd.atdschip.tiling.md) Platform Design Info for Affymetrix Atdschip_tiling | Kristof De Beuf | experiment | 5 May 2026 | 319 | 53 |
| [ConnectivityMap](/bioc/ConnectivityMap.md) Functional connections between drugs, genes and diseases as revealed by common gene-expression changes | Paul Shannon | experiment | 5 May 2026 | 281 | 0 |
| [mammaPrintData](/bioc/mammaPrintData.md) RGLists from the Glas and Buyse breast cancer studies | Luigi Marchionni | experiment | 5 May 2026 | 269 | 0 |
| [curatedBreastData](/bioc/curatedBreastData.md) Curated breast cancer gene expression data with survival and treatment information | Levi Waldron | experiment | 23 Jul 2026 | 268 | 77 |
| [FlowSorted.DLPFC.450k](/bioc/FlowSorted.DLPFC.450k.md) Illumina HumanMethylation data on sorted frontal cortex cell populations | Andrew E Jaffe | experiment | 5 May 2026 | 258 | 144 |
| [FlowSorted.CordBloodNorway.450k](/bioc/FlowSorted.CordBloodNorway.450k.md) Illumina HumanMethylation data on sorted cord blood cell populations | kristina gervin | experiment | 5 May 2026 | 243 | 144 |
| [ccdata](/bioc/ccdata.md) Data for Combination Connectivity Mapping (ccmap) Package | Alex Pickering | experiment | 5 May 2026 | 233 | 0 |
| [FlowSorted.CordBlood.450k](/bioc/FlowSorted.CordBlood.450k.md) Illumina 450k data on sorted cord blood cells | Shan V. Andrews | experiment | 5 May 2026 | 221 | 144 |

This page lists 1 to 14 of 14 packages.

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R Observatory is independent of the R Project, CRAN and Bioconductor. The same page for people is at /packages?catalogue=bioc&release=2.8&view=Spatial%2CMicroarrayData%2CDimensionReduction, and every address is listed at /llms.txt.