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RJaCGH / Datasets

gm03134

CRAN

Public CGH data of Snijders

Rows
2,2716 columns
Size
13,626cells
Missing values
218in 1 column
Other packages, method
1hold the same data

About

Class
data.frame
Kind
data.frame
File
data/snijders.RData
In version
2.0.4

Columns

  1. PosOrderinteger12271
    Lowest
    1
    Lower quartile
    568.5
    Median
    1136
    Mean
    1136
    Upper quartile
    1704
    Highest
    2271
    Standard deviation
    655.7
    Distinct
    2,271
  2. LogRationumeric-2.7560.3069.6% missing
    Lowest
    -2.756
    Lower quartile
    -0.038
    Median
    -0.0018
    Mean
    -0.0009
    Upper quartile
    0.045
    Highest
    0.306
    Standard deviation
    0.113
    Outliers
    25 low, 34 high
    Zeros
    1
    Skewness
    -9.4
    Distinct
    2,038
    Missing
    218 (10%)
  3. PosBaseinteger0245,000
    Lowest
    0
    Lower quartile
    30,259
    Median
    62,929
    Mean
    72,799
    Upper quartile
    107,951
    Highest
    245,000
    Standard deviation
    53,798
    Outliers
    20 high
    Zeros
    20
    Skewness
    0.79
    Distinct
    2,003
  4. Chromosomeinteger123
    Lowest
    1
    Lower quartile
    5
    Median
    9
    Mean
    9.964
    Upper quartile
    14
    Highest
    23
    Standard deviation
    5.892
    Skewness
    0.428
    Distinct
    23
  5. BACfactorCTB-102E19 4%CTB-112f7 2%
    Levels with no rows
    2,188
    LevelRowsShare
    CTB-102E1934%
    CTB-112f722%
    CTB-142o2422%
    CTB-339E1222%
    CTB-36f1622%
    GS1-202O822%
    GS-249b1022%
    RP11-105K0522%
    RP11-10G1022%
    RP11-119j2022%
    RP11-13c2022%
    RP11-149G1222%
    RP11-172D0222%
    RP11-175H2022%
    RP11-188C1022%
    RP11-1l2222%
    RP11-204M1622%
    RP11-20K0422%
    RP11-221P0722%
    RP11-238h1022%
    RP11-261b2022%
    RP11-268N0222%
    RP11-30m0122%
    RP11-31b0622%
    RP11-32H1122%
    RP11-39a0822%
    RP11-67j0222%
    RP11-72c0622%
    RP11-83O1422%
    RP11-94M1322%

    The largest 30 of 50 levels

  6. StatutfactorNormal 99%Monosomy under 1%
    LevelRowsShare
    Normal2,25599%
    Monosomy16under 1%