About
Method, About Method The datasets inside packages are read from their R objects in datasets
data/ folders when the code is analysed. Each object is described by its class, its shape and its columns, and fingerprinted so the same data can be found in other packages.data() are listed, 76,158 on CRAN and 8,045 on Bioconductor, so the list is not every file in data/.
- Class
- data.frame
- Kind
- table
- File
inst/extdata/ppAll_V35_map.txt- In version
- 3.23
Columns
SampleIDinteger103,092,734970,836,7957.3% missing- Lowest
- 103,092,734
- Lower quartile
- 159,591,683
- Median
- 160,987,560
- Mean
- 390,229,070
- Upper quartile
- 763,698,834
- Highest
- 970,836,795
- Standard deviation
- 284,775,227
- Skewness
- 0.575
- Distinct
- 238
- Missing
- 501 (7%)
RSIDinteger700,013,549700,114,9658.2% missing- Lowest
- 700,013,549
- Lower quartile
- 700,033,566
- Median
- 700,096,716
- Mean
- 700,071,101
- Upper quartile
- 700,105,358
- Highest
- 700,114,965
- Standard deviation
- 37,738
- Skewness
- -0.267
- Distinct
- 4,735
- Missing
- 564 (8%)
PSNcharacter100% missing- Distinct
- 0
- Missing
- 6,908 (100%)
SNinteger700,013,596700,114,9870.2% missing- Lowest
- 700,013,596
- Lower quartile
- 700,032,270
- Median
- 700,095,768
- Mean
- 700,067,724
- Upper quartile
- 700,103,689
- Highest
- 700,114,987
- Standard deviation
- 38,946
- Skewness
- -0.139
- Distinct
- 5,223
- Missing
- 13 (under 1%)
NAPcharacter9 to 11 characters- Shortest
- 9 characters
- Longest
- 11 characters
- Distinct
- 177
ExperimentAccessioncharacter9 to 19 characters- Shortest
- 9 characters
- Longest
- 19 characters
- Distinct
- 5,133
RunIDcharacter7 to 9 characters- Shortest
- 7 characters
- Longest
- 9 characters
- Distinct
- 5,186
SRS_SampleIDcharacteralways 3 characters- Shortest
- 3 characters
- Longest
- 3 characters
- Distinct
- 1
Regioncharacter9 to 15 characters- Shortest
- 9 characters
- Longest
- 15 characters
- Distinct
- 394
BarcodeSequencecharacteralways 18 characters- Shortest
- 18 characters
- Longest
- 18 characters
- Distinct
- 1
LinkerPrimerSequencecharacter4 to 6 characters0.2% missing- Shortest
- 4 characters
- Longest
- 6 characters
- Distinct
- 2
- Missing
- 13 (under 1%)
Sexcharacter5 to 28 characters0.2% missing- Shortest
- 5 characters
- Longest
- 28 characters
- Distinct
- 18
- Missing
- 13 (under 1%)
HMPBodySubsiteHMPBodySitecharacter4 to 22 characters0.2% missing- Shortest
- 4 characters
- Longest
- 22 characters
- Distinct
- 6
- Missing
- 13 (under 1%)
VisitNointeger131.1% missing- Lowest
- 1
- Lower quartile
- 1
- Median
- 1
- Mean
- 1.38
- Upper quartile
- 2
- Highest
- 3
- Standard deviation
- 0.494
- Skewness
- 0.592
- Distinct
- 3
- Missing
- 76 (1%)