**Older release.** CRAN archived this package on 31 Aug 2013.

# trio 1.0.14 (CRAN)

Part of: [trio](/cran/trio.md)

- Released: 8 Mar 2010 (R 2.10.1 at the time)
- Advisories: None known (for this release)
- Test coverage: – (not measured for this release)
- Public exports: 12 (none added or removed)

Record made 29 Oct 2026, 05:12 UTC from data release v2026-10-28, merged 23:10 UTC. Project DOI 10.5281/zenodo.21843040. Address: https://r-observatory.thecoatlessprofessor.com/cran/trio/v/1.0.14

This page reports what R Observatory measured for this release. It is not a validation, and it does not say whether the package is fit for your intended use.

## Compare

Compared with 2.1.1, released 7 Aug 2013.

- Time between: 1,248 days (33 releases in between)
- Advisories: None known (for either release)
- Exports: 1 removed (38 added as well)
- Files changed: 315 (+28,584 −19,674 lines)

#### Values that differ (15)

| Measure | Section | 1.0.14 | 2.1.1 |
| --- | --- | --- | --- |
| Maintainer | Release | Qing Li | Holger Schwender |
| Download size | Release | 341 KB | 722 KB |
| Authors | Release | Qing Li, Holger Schwender | Holger Schwender, Qing Li, Christoph Neumann, Margaret Taub, Ingo Ruczinski |
| Public exports | Code | 12 | 49 |
| Internal functions | Code | 17 | 165 |
| Lines of R code | Code | 11,888 | 16,961 |
| Complexity | Code | mean 8.0, highest 43 | mean 6.4, highest 43 |
| Help pages with running examples | Tests | 0 of 3 | 18 of 32 |
| Help pages | Documentation | 14 | 32 |
| Exports with examples | Documentation | 33.3% | 100% |
| Arguments documented | Documentation | 96.3% | 99.2% |
| Return value documented | Documentation | 100% | 96.2% |
| Vignettes | Documentation | 0 | 1 |
| Depends | Dependencies | survival, haplo.stats | R (>= 3.0.1) |
| Suggests | Dependencies | None | survival, haplo.stats, mcbiopi, siggenes, splines, LogicReg (>= 1.5.3), logicFS (>= 1.28.1) |

**Exports added (38)**

- `allelicTDT`
- `colGxE`
- `colGxEPerms`
- `colGxG`
- `colGxGPerms`
- `colMAFtrio`
- `colPOlrt`
- `colTAT`
- `colTDTebam`
- `colTDTmaxStat`
- `colTDTmaxTest`
- `colTDTsam`
- `compPermTDT2way`
- `fastGxG`
- `fastGxGrec`
- `getGxEstats`
- `getLDlarge`
- `getMatPseudo`
- `gtdt.ebam`
- `gtdt.stat`
- `lrControl`
- `orderSNPs`
- `poly4root`
- `poly4rootMat`
- `probTDT`
- `removeSNPs`
- `removeTrios`
- `scoreGxE`
- `scoreGxG`
- `scoreMaxStat`
- `scoreTDT`
- `splitBlocks`
- `tdtGxG`
- `trio.permTest`
- `trio.power`
- `trio.prepare`
- `trioFS`
- `trioLR`

**Exports removed (1)**

- `trio`

**Most changed files (12 of 315)**

| File | Lines added | Lines deleted |
| --- | ---: | ---: |
| `R/qingInternal.R` | 11,056 | 526 |
| `src/generalLR.f` | 3,477 | 3,477 |
| `inst/doc/trio.Rnw` | 1,341 | 726 |
| `src/trioExternal.f` | 684 | 684 |
| `vignettes/trio.Rnw` | 1,260 | 32 |
| `src/trioLR.f` | 350 | 769 |
| `R/trioLR.R` | 481 | 248 |
| `R/colGxE.R` | 599 | 118 |
| `R/trio.power.R` | 629 | 7 |
| `R/tdt.R` | 252 | 379 |
| `R/colTDTsam.R` | 552 | 5 |
| `inst/plugin/My_own_scoring.f` | 442 | 23 |

[Both releases side by side](/cran/trio/compare/1.0.14...2.1.1.md)

## Release

- Published: 8 Mar 2010
- Status: Replaced by 1.0.15 on 10 Mar 2010
- Previous: 1.0.13, 3 Mar 2010
- License: LGPL-2, OSI approved
- Maintainer: Qing Li
- Download size: 341 KB
- Authors: Qing Li, Holger Schwender
- Source code: Not kept for this release

## Advisories

[Method](/about/advisories.md)

- This release: [None known](/about/advisories.md)

## CRAN checks

[Method](/about/checks-health.md)

- Results: CRAN archived this package on 31 Aug 2013

## Code

[Method](/about/code-metrics.md)

- Lines of R code: 11,888
- Public exports: 12
- Internal functions: 17
- Mean complexity: 8.0 (the most is 43)

#### Lines by kind (12,904)

| Kind | Lines | Share |
| --- | ---: | ---: |
| R code | 11,888 | 92% |
| Documentation | 1,016 | 8% |

## Tests

[Method](/about/coverage.md)

- Test cases: 0
- Lines of tests: 0
- Exports named in tests: 0%

- Tests: No
- Test lines per line of code: 0.00
- Coverage: Not measured for this release
- Help pages with running examples: 0 of 3

## Documentation

[Method](/about/code-metrics.md)

- Exports documented: 100%
- Arguments documented: 96.3%
- Return value documented: 100%
- Vignettes: 0

- Help pages: 14
- Exports with examples: 33.3%
- NEWS: No
- Citation file: No
- Website: Not kept for this release

## Dependencies

[Method](/about/reverse-dependencies.md)

- Depends: survival, haplo.stats
- Imports: None
- LinkingTo: None
- Suggests: None
- Install tree: Kept only for packages on CRAN
- Advisories in the install tree: Kept only for packages on CRAN

[SBOM](/cran/trio/v/1.0.14/sbom.md)

## Today

Checks, downloads, dependents, people and the repository describe the package as it is now, so they are on the package page.

[The package page](/cran/trio.md)

## Sources

| Part | From | As of |
| --- | --- | --- |
| Release history | CRAN package versions | 28 Oct 2026 |
| Advisories | osv-advisories 1.0.0, R version 4.6.1 (2026-06-24) | 28 Oct 2026 |
| CRAN checks | CRAN check results | CRAN archived this package on 31 Aug 2013 |
| Tests, documentation, code | rpkg-analyzer 0.5.2 | 5 Oct 2026 |
| Coverage | covr | Not measured for this release |
| Use | CRAN downloads, reverse dependencies, repository | Not shown for this release |

Daily data releases are kept on GitHub, so the data behind this record can be fetched again from v2026-10-28 (merged 23:10 UTC). Values not kept for a release say so and are never filled in from another release.

---

R Observatory is independent of the R Project, CRAN and Bioconductor. The same page for people is at /cran/trio/v/1.0.14, and every address is listed at /llms.txt.