**Older release.** The current release is [Bioconductor 3.23](/bioc/miRSM/v/3.23.md).

# miRSM Bioconductor 3.13 (Bioconductor) (package version 1.10.0)

Part of: [miRSM](/bioc/miRSM.md)

- Released: 20 May 2021 (with R 4.1)
- Advisories: None published (for Bioconductor)
- Test coverage: – (not measured for Bioconductor)
- Public exports: 17 (none added or removed)

Record made 29 Oct 2026, 05:13 UTC from data release v2026-10-28, merged 23:10 UTC. Project DOI 10.5281/zenodo.21843040. Address: https://r-observatory.thecoatlessprofessor.com/bioc/miRSM/v/3.13

This page reports what R Observatory measured for this release. It is not a validation, and it does not say whether the package is fit for your intended use.

## Compare

Compared with Bioconductor 3.23, released 29 Apr 2026.

- Time between: 1,805 days (9 releases in between)
- Advisories: None published (for Bioconductor)
- Exports: 3 added (none removed)
- Files changed: 62 (+15,026 −2,819 lines)

#### Values that differ (12)

| Measure | Section | Bioconductor 3.13 | Bioconductor 3.23 |
| --- | --- | --- | --- |
| Package version | Release | 1.10.0 | 2.8.2 |
| R version | Release | 4.1 | 4.6 |
| Public exports | Code | 17 | 20 |
| Internal functions | Code | 14 | 34 |
| Lines of R code | Code | 2,065 | 4,816 |
| Lines of compiled code | Code | 34, 0.9% of code | 3,467, 29.7% of code |
| Complexity | Code | mean 5.1, highest 25 | mean 8.3, highest 39 |
| Test lines per line of code | Tests | 0.01 | 0.00 |
| Exports named in tests | Tests | 11.8% | 10% |
| Help pages with running examples | Tests | 16 of 17 | 19 of 20 |
| Help pages | Documentation | 22 | 25 |
| Direct dependencies | Dependencies | 32 | 31 |

**Exports added (3)**

- `diff_module`
- `miRSM_SS`
- `module_group_sim`

**Most changed files (12 of 62)**

| File | Lines added | Lines deleted |
| --- | ---: | ---: |
| `R/miRSM.R` | 4,160 | 1,422 |
| `inst/extdata/Groundtruth_high.csv` | 3,729 | 0 |
| `vignettes/miRSM.html` | 1,611 | 0 |
| `src/OCG_algorithm.c` | 1,058 | 0 |
| `src/linkcomm_hclust.cpp` | 574 | 0 |
| `src/linkcomm_edgesims.cpp` | 510 | 0 |
| `src/linkcomm_edgesims_all.cpp` | 459 | 0 |
| `man/miRSM.Rd` | 154 | 134 |
| `man/module_biclust.Rd` | 118 | 158 |
| `src/linkcomm_linkdensities.cpp` | 245 | 0 |
| `src/linkcomm_functions.cpp` | 243 | 0 |
| `man/module_clust.Rd` | 106 | 106 |

[Both releases side by side](/bioc/miRSM/compare/3.13...3.23.md)

## Release

- Package version: 1.10.0
- Bioconductor release: 20 May 2021
- R version: 4.1
- Status: Replaced by 3.14 on 27 Oct 2021
- Previous: 3.12, 28 Oct 2020
- First Bioconductor release: 3.8, 31 Oct 2018
- Last Bioconductor release: 3.23, 29 Apr 2026
- License: GPL-3, OSI approved
- Maintainer: Not kept for this release
- Authors: Junpeng Zhang
- Source code: [https://github.com/zhangjunpeng411/miRSM](https://github.com/zhangjunpeng411/miRSM)

## Advisories

[Method](/about/advisories.md)

- This release: None published for Bioconductor

## Checks

[Method](/about/checks-health.md)

- Results: Not collected for Bioconductor

## Code

[Method](/about/code-metrics.md)

- Lines of R code: 2,065
- Public exports: 17
- Internal functions: 14
- Mean complexity: 5.1 (the most is 25)

#### Lines by kind (3,622)

| Kind | Lines | Share |
| --- | ---: | ---: |
| R code | 2,065 | 57% |
| Tests | 16 | 0.4% |
| Documentation | 1,205 | 33% |
| Guides | 302 | 8% |
| Compiled code | 34 | 0.9% |

## Tests

[Method](/about/coverage.md)

- Test cases: 1
- Lines of tests: 16
- Exports named in tests: 11.8%

- Tests: Yes, R scripts, 1 script file
- Test lines per line of code: 0.01
- Coverage: Not measured for Bioconductor packages
- Help pages with running examples: 16 of 17

## Documentation

[Method](/about/code-metrics.md)

- Exports documented: 100%
- Arguments documented: 100%
- Return value documented: 100%
- Vignettes: 1

- Help pages: 22
- Exports with examples: 100%
- NEWS: Yes
- Citation file: Yes, cites a publication
- Website: No, not declared in DESCRIPTION

## Dependencies

[Method](/about/reverse-dependencies.md)

- Direct dependencies: 32
- Install tree: Not collected for Bioconductor

[SBOM](/bioc/miRSM/v/3.13/sbom.md)

## Today

Checks, downloads, dependents, people and the repository describe the package as it is now, so they are on the current release.

[miRSM Bioconductor 3.23](/bioc/miRSM/v/3.23.md) | [the package page](/bioc/miRSM.md)

## Sources

| Part | From | As of |
| --- | --- | --- |
| Release dates | Bioconductor release dates | 28 Oct 2026 |
| Advisories | osv-advisories 1.0.0, R version 4.6.1 (2026-06-24) | 28 Oct 2026 |
| Checks | Not collected for Bioconductor |  |
| Tests, documentation, code | Bioconductor metrics, rpkg-analyzer 0.5.0 | 28 Sep 2026 |
| Coverage | Not measured for Bioconductor packages |  |
| Use | Bioconductor downloads, reverse dependencies, repository | Not shown for this release |

Daily data releases are kept on GitHub, so the data behind this record can be fetched again from v2026-10-28 (merged 23:10 UTC). Values not kept for a release say so and are never filled in from another release.

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R Observatory is independent of the R Project, CRAN and Bioconductor. The same page for people is at /bioc/miRSM/v/3.13, and every address is listed at /llms.txt.